| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1287 |
|---|
| Symbol | |
|---|
| ID | 6986967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1397327 |
|---|
| End bp | 1397785 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379651 |
|---|
| Product | putative RNA methyltransferase |
|---|
| Protein accession | YP_002262750 |
|---|
| Protein GI | 209694822 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000276682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAG GTTACTCTTG TATTGGATTG GTAAACCCAA AAACACCTGA AAATGTAGGC
TCAGTAATGC GAGCGGCAGG TTGCTATGGC GTAAACTCGG TATTTTACAC GGGAAGACGT
TACGATATTG CCAAGAAATT TTGTACTGAT ACAAAAAGTC AGCACCTCAA TGTGCCACTT
ATTGGTGTTG AAGATCTTAA AGATATTATT CCTTTAGATT GTGTTCCTGT TGCTGTCGAT
CTTATCGAAG GCGCAAAGCC GTTACCAGAT TACAAGCACC CTCCTCGTGC GTTTTATATT
TTTGGCCCTG AAGACGGTAC ATTGAAAAAA GAGATCACTG ATTTCTGCCG TGAAACCATT
TATGTACCTA CCAATGGCTG CATGAACTTA GCGGCTGCTG TGAATGTGAT CATGTACGAT
CGCATGGCGA AAGGTGAAAA CTTCTCAAAC CATAAGTAG
|
|---|
| Protein sequence | MTKGYSCIGL VNPKTPENVG SVMRAAGCYG VNSVFYTGRR YDIAKKFCTD TKSQHLNVPL
IGVEDLKDII PLDCVPVAVD LIEGAKPLPD YKHPPRAFYI FGPEDGTLKK EITDFCRETI
YVPTNGCMNL AAAVNVIMYD RMAKGENFSN HK
|
|---|
| |