Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1198 |
Symbol | |
ID | 6988580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1306260 |
End bp | 1308137 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643379573 |
Product | probable membrane permease |
Protein accession | YP_002262672 |
Protein GI | 209694744 |
COG category | [R] General function prediction only |
COG ID | [COG2985] Predicted permease |
TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTG ATCAATTGAG TAACGTCTTT CACTGGATGA AGTCTCAACG CCGGACTTTA TTACTTACTC TGTCACTTTT TCTCTTCTCT AGTCGCCTTA TGGCTGCCGA ATCGGTTGAA GCGTTAGCGC AACATGAAGC CTCTGGATTA TTTGGTTTTT TGTTTACGTA TATCGCCCAC AATCCTTTTG TGTTTCTTTT CTTAAGCATT GCCATTGGCT ATCCTTTAGG AAAAGTAACG ATTAAAGGCA TCAACTTAGG TTCAACGGCG GGTACTCTGG TTGTTGGTGT TGGTATCGCG TTAACCGCTT TCTCTGTTTA TGGTTTACAT ATTGATGCGC CGGGTTTGGT GTCTGATATC TTCTTAATGA TGTTCATGTA CGCTATTGGT ATGAAAGTAG GACCACAGTT TTTCTCTGGA TTGGCACGAG GAGGAATAGA CTTTGTTGTT ATTGGTCTTA TTGTCGTGTT CAGTAATTTC CTAATTGTTT TCTTTGGTTC TAAATTACTG GATTTAGCAC CGGGTTATGC GGCAGGGATT ATTTCTGGAA GTTACACTGT AACTGCCGTG ATGGGCGTAG CTCAATCTGC CATTAATTTA GGGGCAGTTA AAGCACCTGC AGGAATGACG CTTGATCAAA TCAGTGCCAA CATAGCCGCG GGTTATGCCA TTAGTTATAT TCTTTCTAGT GTCTTCATTA TTTTACTTAT TAAATACCTA CCTGCGATGT TTGGTATTGA TCCGGTGAAA GCGGGTAAAG ATGCTGAAGC CGATTTTGGT GCGGGTGGTG ATACAGAAGC ATTACCAAGC ACGAATGGAT TCTCAAATTT AGGGGTTCTT CCTCTAGATA TTCGAGCGTA CAGAGTTGAT CACCAAGAAT TAGTTGGACA GAATGTAGAA GCGTTATTTC ATCGTTATCC CCATGCTGCG ATCCTTAAAG TCGTTCGTGG TGATGAGGTG TTTGATGCGG TAGATAACCC ACAACTTCAA CTTGGAGATG TCATCGGTAT CCGAGGTGAC TACCATGTAT TAATCGAAGG CGGCGAATCT ACGGTTGGTG TTGAAGTTGA TGAGCCTAGA GCGCGTAATG TTGATATCGA AGTTGCCGAT ATTCATTTAG GTAAATCAGC CTACACAAGC AAAACCATCG AAGAAATGAG TAAAGAAGTT GGTTTTGGTA TCTACATGAA AGCGGTGTTT AGACAAGGGC ATCAGTTACC GATGTTACCT CAAACCGTGG TTGAAGTCGG TGATGTTATT CGTGTCGCTG GTTCTGATTG GTGTGTTAAA CAAGCTGCTA AAAAACTGAA CAGTAATCCG ATTGTTGAGA GTACGCTAAC AGAAACATTC TATTTGGCGC TTTCTTTGTT AATTGGTTAT GTGTGTGGAC ACTTAAGTGT GACCTTTAGT GGCATTCCAT TTGCATTAGG AACCTCTGCG GGCTGTATGC TTACAGGAAT CATCTTTTCG TTCTTGAGAA CTCGCAATCC CGCCTTTGGT GGACCAATGA GTGAGGGCGC GCGTAGCTTC TTACAAGATA TTGGTTTGAG CTTGTTTGTT GCAGTATTAG CAGCAGCAGT AGGCCCTAAA ATATTGGCGT CATTCCAAGG TATTGTAGTG ATTAAGATTG CAGGCTTAGG TTTATTGGCA GCGTTACTTC CACCATTGTT GGCTTGGATT TATGGTTTAT ATTTCCGCAA AATGAACCCT GCGATCCTTG CTGGTGCATG TGCTGGTGCT CGTAATAGTA CACCTGCAAT GAAAGGCGCT CAGGATGAAT GTCAAAGTGA TATGCCTGCG GTAGGCTATC CGGTTCCTTA TGCGTTAACG TCTATGATAG TACTGGTTTT AGGTTACCTA ACCATGGTCT TATACTAA
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Protein sequence | MNIDQLSNVF HWMKSQRRTL LLTLSLFLFS SRLMAAESVE ALAQHEASGL FGFLFTYIAH NPFVFLFLSI AIGYPLGKVT IKGINLGSTA GTLVVGVGIA LTAFSVYGLH IDAPGLVSDI FLMMFMYAIG MKVGPQFFSG LARGGIDFVV IGLIVVFSNF LIVFFGSKLL DLAPGYAAGI ISGSYTVTAV MGVAQSAINL GAVKAPAGMT LDQISANIAA GYAISYILSS VFIILLIKYL PAMFGIDPVK AGKDAEADFG AGGDTEALPS TNGFSNLGVL PLDIRAYRVD HQELVGQNVE ALFHRYPHAA ILKVVRGDEV FDAVDNPQLQ LGDVIGIRGD YHVLIEGGES TVGVEVDEPR ARNVDIEVAD IHLGKSAYTS KTIEEMSKEV GFGIYMKAVF RQGHQLPMLP QTVVEVGDVI RVAGSDWCVK QAAKKLNSNP IVESTLTETF YLALSLLIGY VCGHLSVTFS GIPFALGTSA GCMLTGIIFS FLRTRNPAFG GPMSEGARSF LQDIGLSLFV AVLAAAVGPK ILASFQGIVV IKIAGLGLLA ALLPPLLAWI YGLYFRKMNP AILAGACAGA RNSTPAMKGA QDECQSDMPA VGYPVPYALT SMIVLVLGYL TMVLY
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