| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1197 |
|---|
| Symbol | gadB |
|---|
| ID | 6986887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1304769 |
|---|
| End bp | 1306163 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643379572 |
|---|
| Product | glutamate decarboxylase beta |
|---|
| Protein accession | YP_002262671 |
|---|
| Protein GI | 209694743 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTTC ATTCTAAAGA TACAGTCAGA GACGATCTTC TTGATGATGT TTATTCATCA
ACTGACCTTT CCCTATCTAT GCCAAAATAC AAAATGCCTG AGCACGAACA TGATCCTCGT
CATGCTTATC AAGTTGTTCA TGATGAGCTA ATGATGGATG GGAATTCTCG ACAGAATTTA
GCGACCTTTT GCCAAACTTG GGTTGAAGAT GAAGTCCACA AACTAATGGA CGAATGCATC
GATAAAAACA TGATCGATAA GGATGAATAT CCTCAAACCG CAGAGCTTGA AGCTCGTTGT
GTGCATATGT TAGCTGATTT ATGGAACTCT CCAGATGCAG AAAATACGTT AGGTTGTTCT
ACTACGGGGT CAAGTGAAGC CGCAATGCTC GGCGGAATGG CGCTAAAATG GGCTTGGCGT
GAAAAAATGA AAAAACTTGG CAAACCAACA GACAAACCAA ATATGATCTG TGGTCCTGTT
CAAGTGTGCT GGCATAAATT TGCTCGTTAT TGGGATATTG AATTACGTGA GATCCCAATG
GAAGGCGATC GTCTAATTAT GACGCCTGAA GAAGTGATTA AACGTTGTGA TGAAAATACC
ATCGGTGTAG TTCCAACGTT GGGTGTGACA TTTACTTGTC AGTATGAACC AGTAAAAGCA
GTGCATGAAG CGTTAGATAA ACTACAAGAA GAAACTGGTT TAGATATTCC AATGCACATT
GATGCGGCGA GTGGCGGTTT CTTAGCCCCA TTCTGTGATC CTGAGTTAGA GTGGGATTTC
CGTTTACCTC GTGTGAAATC AATCAATGCG TCAGGCCATA AATTTGGTTT GAGTCCATTA
GGTGTGGGTT GGGTAATATG GCGTGATGCA TCTGCATTGC ACGAAGATCT TATTTTTAAC
GTGAATTACT TAGGTGGCAA CATGCCTACT TTCGCGTTGA ACTTCTCTCG CCCTGGCGGC
CAAATTGTAG CGCAATACTA TAATTTCTTA CGTTTAGGTA AAGAAGGGTA CCGTAAGATC
CACCAAGCGT GTTACGACAC GGCGGTGTAT CTTTCTGCTG AAATCGAAAA AATGGGCATG
TTTGACATTA TTTATGATGG TAAAGGTGGT ATCCCTGCAA TGAGTTGGTC GCTTAAAGAA
GGCGTGAACC CTGGGTTTAA CTTGTTTGAT CTTTCAGACC GAATTCGTTC TCGCGGTTGG
CAAATTGCCG CTTATGCAAT GCCACCAAAA CGTGAAGACT TGGTGATTAT GCGTATTTTG
GTTCGTCATG GCTTTAGCCG AGATCAAGCT GATCTACTGG TTGCCGATCT GAAACATTGC
ATCGAGTTTT TCGATAAGCA CCCAATCTCC CATGGTAGTG ATGAAGTTGA ATCTTCAGGC
TTTAATCACG GTTAA
|
|---|
| Protein sequence | MPLHSKDTVR DDLLDDVYSS TDLSLSMPKY KMPEHEHDPR HAYQVVHDEL MMDGNSRQNL
ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELEARC VHMLADLWNS PDAENTLGCS
TTGSSEAAML GGMALKWAWR EKMKKLGKPT DKPNMICGPV QVCWHKFARY WDIELREIPM
EGDRLIMTPE EVIKRCDENT IGVVPTLGVT FTCQYEPVKA VHEALDKLQE ETGLDIPMHI
DAASGGFLAP FCDPELEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALHEDLIFN
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAVY LSAEIEKMGM
FDIIYDGKGG IPAMSWSLKE GVNPGFNLFD LSDRIRSRGW QIAAYAMPPK REDLVIMRIL
VRHGFSRDQA DLLVADLKHC IEFFDKHPIS HGSDEVESSG FNHG
|
|---|
| |