| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1180 |
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| Symbol | vasD-1 |
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| ID | 6989376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1285317 |
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| End bp | 1285781 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 643379556 |
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| Product | putative type VI secretion protein VasD-1 |
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| Protein accession | YP_002262655 |
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| Protein GI | 209694727 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0234801 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAAAGT GGTTAATGTC ATCTATTGTT GTTTTGTTAC TATCAGGTTG TAGTTTTAGT
GGTGAAGAAT TTACTCCTCA AGTTGTACTT AATATAAAAG CTGCTTCAAA TATCAACCCT
AATGTAGAAG GAAAGCCTTC ACCGTTAGAA TTACGTGTAT ATCAGTTAAC TGATAGTCAA
GCGTTTTCAC AGGCAGATTT TATTCAAATT TATAATGATG AGCAGGGTGT CTTAAAAGCA
GAGTTATTAC TTGCTCGTCA ATTAGAAAGC ATTTTACCAG GAGAAACACG TCAAGAAGTA
TTTCCTCTTG CTGCAGAAAC TAAATATATC GGTGTTATTG CAGAGTTTGC TGCCTACCGT
GAAGCAAAAA ATAAAGTTAT CTATAAACCG ATAATCTTAG GAATTACAGC CATTAATATT
GAAGTCGATG GGATTAATCT ATCAGTATCA GGCGAAGAGG AATAA
|
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| Protein sequence | MRKWLMSSIV VLLLSGCSFS GEEFTPQVVL NIKAASNINP NVEGKPSPLE LRVYQLTDSQ
AFSQADFIQI YNDEQGVLKA ELLLARQLES ILPGETRQEV FPLAAETKYI GVIAEFAAYR
EAKNKVIYKP IILGITAINI EVDGINLSVS GEEE
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