| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1179 |
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| Symbol | vasC-1 |
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| ID | 6989401 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1284376 |
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| End bp | 1285320 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643379555 |
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| Product | putative type VI secretion protein VasC-1 |
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| Protein accession | YP_002262654 |
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| Protein GI | 209694726 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.118714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATAT CGATAAGAAT AATTAGCTCG CCAGACGGAG AAAGTATCTC TGAGTGGAAT
AAACTACTTC CTGAAGAAGG AGGAAGTATC GGTCGTGCTT TTGGTGCTTC TATTCAATTA
AGTGATGCTA TTCGAGAGGT CTCAGCCTCT CATGCCATCA TTAAAAAAAC ATCTCGTGGT
TATCAAATCA TCGATGATAG TACTAATGGT TTATTTATTA ATGGTTCAGA TAAACCGCTT
GGTTTAAGTA ATCAAACAGC ATTAAATGAT GGAGATATTC TTGATATCGG TCGTTATCGC
TTATTGGTGT CTTGTTTTGT TCCTGAACAA GCCCAGATAC AGGATTTTTC AACGTTATCT
GAAGACTTCT CATTAGGAGG TGACCCTTTT AATATCTCTG AAGTTGAGCC TTCGTTTTCT
TCAAGTTTTG TTCATAAAGA ACCGGAATTA GATTTTGCGT TTTCTGATTG CAATATTATT
GGTGATAACC CGTTTAATAT CGAAGATATA AAAAAAGTAC AAGAACATAA AGAAGTAAAT
TTAAGCTTTG TGGCATTAGA TGATGACCCA TTTTCAGGTT CAGAGCTTCA ATTAAATTTA
CCTTTAGAAT CAAAGGAAGG TAAAGCCTCA ATACAAGAAA GCGCAGATGA TAAATACGCA
TTTATAGTTG ATCAAAAAAG TGAAGAACGA ACGCAGCTAC ATATGAATAG AGCCCTAGAA
ATGGCGTTAA CCCGTTTGTT GTCAGATATT TCACCTCATG CAATGGAAGA TATGTTTGAT
GAGATTTCAA GACCAAGTTT TTTTAGTGGT GTACCAAAAT ATTGGGATAT GTATAAGCGT
TATTTTACTC GACAAGTTGA AAACAAAGAT TGGCAAATTA AATTTCATGC TTATTTTCAT
GATGCAATCC GTCTGCAGCG TAACCTAGAA CGAGGCAACA AATGA
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| Protein sequence | MPISIRIISS PDGESISEWN KLLPEEGGSI GRAFGASIQL SDAIREVSAS HAIIKKTSRG
YQIIDDSTNG LFINGSDKPL GLSNQTALND GDILDIGRYR LLVSCFVPEQ AQIQDFSTLS
EDFSLGGDPF NISEVEPSFS SSFVHKEPEL DFAFSDCNII GDNPFNIEDI KKVQEHKEVN
LSFVALDDDP FSGSELQLNL PLESKEGKAS IQESADDKYA FIVDQKSEER TQLHMNRALE
MALTRLLSDI SPHAMEDMFD EISRPSFFSG VPKYWDMYKR YFTRQVENKD WQIKFHAYFH
DAIRLQRNLE RGNK
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