| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1172 |
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| Symbol | vasRA-1 |
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| ID | 6989393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1275399 |
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| End bp | 1276880 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379548 |
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| Product | putative type VI secretion protein VasRA-1 |
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| Protein accession | YP_002262647 |
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| Protein GI | 209694719 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.217687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACAG AGCAGCAAAT AACACCAGAA GGTACTATAG AAGCGGGGAT AACAATCAGT
ATTCTTGATC GTGCGATTAC CGCTACAGCT CAAACACCTG TTGATACAAC AAAAGAGCTT
CTGAGTATTC TGACTTCGCA AGTACTTGAT GGTACGGTTA CGTGGGATAA AAATTTAACT
CTTACTATCG AAAAAGCGAT TAATGCAATT GATACTAAAA TTTCTGAACA ACTTTCATCT
GTTATGCAGA ACCGTGATTT TCAGAAATTA GAAGGTACTT GGCTTGGTTT ACAAAAGCTA
GTTAAAAATA GCGATCTTGG GGCTGACCTT AAAATTAAAT TAGCAGATTA CACTAAAGAT
GAACTGTTAG AACAATTTGA AGATGCTCCA GCAATCGATC GTAGTCGTTT CTTTAATATG
GTTTACCAAG AAGAGTTTGG TACTGCTGGT GGTCAACCTT ATGGCGCTTT GATTGGTGAC
TATGAGTTTG GTTATGGTGA CGAAGATGTT GCTTTATTAC GCTATATGGG TGAAGTAGCC
TCCGCTTCTC ATGCACCATT TATTGCAGCA GCAAGTGCAA GCATGTTTGA TTTCACTACT
TATGCAACTT TCTCAGATGG TAAGCCTGTC GCAGCAGGTT TTGATTCTCC AGCTTATGTT
AGTTGGAACG CTTTCCGTGC AAGTGACGAC TCTCGTTATG TGGCATTAAC TCTGCCTAAA
ACCATCGCAC GTCAGCCTTA CGGTGCACAA ACAGTACTGG TTAAATCATT TGATTTTGAA
GAATTGAAAA CACGTGATAA TGGCCAACAA ATTGTAGGTT CAGATGAAGA CTTTGTCTGG
AGTAATGCGG CGTATGAATT CGGTTTATTA CTAACGCGGT CATTCACTGA ATTTGGTTGG
TGTACTGCGG TTCGTGGTAC TGAGAGCGGC GGCAAAGTTG AGAGCTTACC AAGCTTTGCT
TATTACTCAG ATGCAGGTGA TTTGCTGCAA CAATGCCCAA CTGAAGTTAA TTTAACTGAT
GAGCGTGAAA AAGAGCTAAG TGAACTTGGT TTCCTTCCAT TGGTACACTA TAAAAATACA
AATTATGCCG TATTTATGGG AGCGCAAACG GCTCATAAAC CAAGGGGGAG CCTTGACCCT
GATGCAATGG CAAATGCAGC TATTTCAGCT CGTTTACCAT ACACAATGGC AAGTAGCCGT
ATCGCTCAAT GCTTAAAAGT AATGGGTCGA GATCTCATTG GCTCAAACAT CGATCCTAAA
GATGTCGAGA AAGATCTAAA TGCTTGGATC CACAAAGACG TTAATCCAAA TGCGATTGGT
AATGAATCGA AAGCCCGCCA TCCATTAGTT GAAGCAAAAG TGACAGTTGA AGAGCAAGCT
GGCCGCCCTG GTGCGTATTC TGCTGTAGCA TATTTACGCC CTTGGCTTCA AATGGAAGAA
TTAAGCACAT CATTACGTAT GGTTGCAAAT ATTCCTAGTT AA
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| Protein sequence | MSTEQQITPE GTIEAGITIS ILDRAITATA QTPVDTTKEL LSILTSQVLD GTVTWDKNLT
LTIEKAINAI DTKISEQLSS VMQNRDFQKL EGTWLGLQKL VKNSDLGADL KIKLADYTKD
ELLEQFEDAP AIDRSRFFNM VYQEEFGTAG GQPYGALIGD YEFGYGDEDV ALLRYMGEVA
SASHAPFIAA ASASMFDFTT YATFSDGKPV AAGFDSPAYV SWNAFRASDD SRYVALTLPK
TIARQPYGAQ TVLVKSFDFE ELKTRDNGQQ IVGSDEDFVW SNAAYEFGLL LTRSFTEFGW
CTAVRGTESG GKVESLPSFA YYSDAGDLLQ QCPTEVNLTD EREKELSELG FLPLVHYKNT
NYAVFMGAQT AHKPRGSLDP DAMANAAISA RLPYTMASSR IAQCLKVMGR DLIGSNIDPK
DVEKDLNAWI HKDVNPNAIG NESKARHPLV EAKVTVEEQA GRPGAYSAVA YLRPWLQMEE
LSTSLRMVAN IPS
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