| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1161 |
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| Symbol | sohB |
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| ID | 6986872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1264620 |
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| End bp | 1265681 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379539 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_002262638 |
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| Protein GI | 209694710 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.189873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAATTTT TGTTTGATTA CGGTCTCTTT TTAGCAAAGA TAGCAACAGT GGTTGTTTCT
ATTATTGCCA TCTTGGTGGC AGCTAAAGCC GTTAGTGGAA AATCGACTGG CGCAAAAGGT
GAACTAGAAG TCACTAATCT GACTGAGCAA TATAAAGAGA CGGTGGCCGA TTTAGAATAT
CATTTGTTTG ATGACGCAGA ATTAAAAGCG CGTGATAAAG CAGAAAAAAA AGCGGATAAA
GAAGCCGAGA AAGCAAAACA GAAAGAAATA AAACAAGCCG CTAAAGCGGG AACATTAGAG
CTTAAGCGTG ATGCTCGTTT ATTTGTTTTA GATTTTAAAG GCAGCATCGA TGCAAAAGAA
GTTGCGGGCC TTCGTGAAGA AGTGTCAGCA ATTTTAGCGA TTGCCGTAGA AGGGGATGAA
GTGCTTCTTC GTCTTGAAAG TGGTGGGGGG ATGGTTCATG GTTATGGCCT TGCTTCATCA
CAATTAGATC GTCTACGTGA TGCGAATATT ACGCTGACTA TTTCAGTGGA TAAAGTTGCC
GCTTCAGGCG GTTATATGAT GGCGTGTATC GGTGAGAAAA TCATTGCTGC ACCGTTCGCG
ATTGTGGGTT CTATTGGGGT TGTGGCGCAA TTGCCTAACT TTAGTAAGTT GTTGAAAAGA
AATGATATTG AATTTGAACA ACTGACCGCA GGTGAATACA AACGTACGTT AACTATGTTT
GGTGAAAACA GCGATAAAGC ACGTGAGAAG TTTCAATTGG AGTTGGAAGA AACACACGTG
TTATTTAAAG ACTTCATTCA TGAACATCGT GCCGATCTTG ATCTTGAAAA AGTGGCGACT
GGTGAGCATT GGTTTGGAAA GCAAGCGCTA GAGTTAGGTC TCATTGATGC GATACAAACA
TCTGATGATT ATGTAACTCA AGCATGTAAA GATCGTGAAG TATTAGCGAT TCATTATGTG
CAGAAGAAAA AGTTGGGTGC AAAAATTGCG GGCATCGCAG GGCAGTCAGC TGAAAATGTC
TTCATGCGAA TGATTAATAT TGGTCAACGA CCGATTGTTT AA
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| Protein sequence | MEFLFDYGLF LAKIATVVVS IIAILVAAKA VSGKSTGAKG ELEVTNLTEQ YKETVADLEY
HLFDDAELKA RDKAEKKADK EAEKAKQKEI KQAAKAGTLE LKRDARLFVL DFKGSIDAKE
VAGLREEVSA ILAIAVEGDE VLLRLESGGG MVHGYGLASS QLDRLRDANI TLTISVDKVA
ASGGYMMACI GEKIIAAPFA IVGSIGVVAQ LPNFSKLLKR NDIEFEQLTA GEYKRTLTMF
GENSDKAREK FQLELEETHV LFKDFIHEHR ADLDLEKVAT GEHWFGKQAL ELGLIDAIQT
SDDYVTQACK DREVLAIHYV QKKKLGAKIA GIAGQSAENV FMRMINIGQR PIV
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