| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1099 |
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| Symbol | menD |
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| ID | 6988786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1195345 |
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| End bp | 1197078 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643379485 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_002262585 |
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| Protein GI | 209694657 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.841115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCAAC CAGAGCAACA AGTTATGCTA AACCAAGTTT GGGCTGAATT AATTATTGAA
GAATTGGTTC GAAATGGAGT AAAGCATGTT TGTATTGCTC CGGGATCTCG CTCAACACCA
TTAACGCTTG CTGCCTCAGA GCATGAGAAC TTATCAATTC ATACGCATTT TGATGAGCGT
GGATTAGGGT TTTTAGCCTT AGGTATTGCG AAAGCTTCAC TGCAACCTGT TGCTGTTATT
GTGACTTCGG GTACCGCCGT AGCCAATTTA TTGCCTTCAG TGGTTGAATC TGGATTAACC
AAAGAAAAAC TTATTCTCTT AACGGCAGAC CGCCCTGTTG AATTGATCGA TTGCGGAGCC
AATCAAGCCA TTAATCAACA TAATATTTTC TCTTCTCATG TGTGCCATTC TCTTTCTTTA
CCTTCTCCTA GTTCGAATGT ACCTGCTCAA TGGGTATTAA GTCGTTTGGA TCAAGCTTGC
TTTACTCAGA AAGAGCAAGG CGGGGCGATT CATGTGAACT GTCCTTTTCC AGAACCTTTT
TATGGCAAAA AAGACGAAAC CCTTTTACTC GCGTATTTAG CGCCGATTCA AGCGTGGAAA
ACAACAACGC TTCCTTATGT CGAACAATTA ACGCCAAACT ATGATGTCGC TGTATCTCCT
CAATGGATGG AAGTCGCTCA AAAGAAAGGG GTCGTGATCA TCGGCAAAGT GACGTTAGTT
GAGGCGCAAG CGGCTGCAGA CTTAGGGCGA GAGTTAGGTT GGCCTGTTTT GTCTGATCCT
CAATCGGGTT ATTGTTCTGA ATGGGCTCAT TATGATTTAT GGATGCAAAA CCAAGACTGT
TTAGCGTTAT TGGGTGATGT AGAGTGCGTG CTTCAATTTG GTGCGCGTTT GGTATCAAAG
CGTCTTAGTG CGTGGTTATC TATGTACGAT CAACAGTATT GGATAGTGGA TATACATCCC
GAGTTACTTG ATTCAACGTT CCGTCAGCAT ACTCGTTATC ATGCCTCTAT TGTTGATTGG
TGTTCGGCAC ACACAGAACG TTTACAAGGA AGAGATTGTT ACTTTGATCA TGCCCCATTA
ACGCAATGGA GTGAGTCATT AAAAGTGGCC TCTCAAAATA TCTTGGCGCT TACGTGCTCA
ATGGTTTGTC ATACTGAAAC ATTATCTGAA TTAAGTTTTG CACTGACGGT TGGCCAAAAG
GTAAATCACT GTGACTGGTT TATTGGTAAC AGTTTAATTG TTCGTTTATT AGATATGGTT
GGTGAGATTA ATCAGCAATC CGTTTATACC AACCGTGGTG CTTCTGGTAT TGATGGCTTA
ATGGCAACAG CAATGGGCGT TCATCTTTCG AATCAGAACC CTTTATTGTG CTTAGTGGGT
GATACGTCAT TGCTTTATGA TTTGAATTCA TTAGCATTAT TAAAACAAGC GACACAGCCG
ATTGTTGTTG TCGTTTTAAA TAATGATGGT GGTGGTATTT TTGATTTACT GCCTGTTGAT
GAAAAGAAAA AAGACGATTT CTATCGTATG CCTCATCACT TAGAGTTTAG CCACGCGGCT
GCCATGTTTG GGTTGACCTA CCATAAACCC GAAACCTTAA GCTGTGCAAT ATCCATGATC
AATGACGGCT TAAAAGGCGG CGTTCATTTA GTTGAAATTA ATACACCGTC AGGTCAAGCA
GGCGAAGAAT TAACACGATT ATTCCAAACC ATTCAACATG CCACTTTATT CTAA
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| Protein sequence | MMQPEQQVML NQVWAELIIE ELVRNGVKHV CIAPGSRSTP LTLAASEHEN LSIHTHFDER
GLGFLALGIA KASLQPVAVI VTSGTAVANL LPSVVESGLT KEKLILLTAD RPVELIDCGA
NQAINQHNIF SSHVCHSLSL PSPSSNVPAQ WVLSRLDQAC FTQKEQGGAI HVNCPFPEPF
YGKKDETLLL AYLAPIQAWK TTTLPYVEQL TPNYDVAVSP QWMEVAQKKG VVIIGKVTLV
EAQAAADLGR ELGWPVLSDP QSGYCSEWAH YDLWMQNQDC LALLGDVECV LQFGARLVSK
RLSAWLSMYD QQYWIVDIHP ELLDSTFRQH TRYHASIVDW CSAHTERLQG RDCYFDHAPL
TQWSESLKVA SQNILALTCS MVCHTETLSE LSFALTVGQK VNHCDWFIGN SLIVRLLDMV
GEINQQSVYT NRGASGIDGL MATAMGVHLS NQNPLLCLVG DTSLLYDLNS LALLKQATQP
IVVVVLNNDG GGIFDLLPVD EKKKDDFYRM PHHLEFSHAA AMFGLTYHKP ETLSCAISMI
NDGLKGGVHL VEINTPSGQA GEELTRLFQT IQHATLF
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