| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1070 |
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| Symbol | mnmC |
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| ID | 6986832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 1160921 |
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| End bp | 1162963 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379457 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_002262557 |
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| Protein GI | 209694629 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.388206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAA ACCACGTTAT ACCAAAGAAC AACATAACCA ATGCTGTCTT AGAATGGAAT
GAGTCTGGAA CACCAGTCTC CAATGATTTT GATGATGTGT ATTTCTCTAA TGATAATGGG
TTAGAAGAAA CACGCTATGT CTTTTTACAA CAAAATCATC TCCTGCAAAG ATGGCAAGAG
TGTGACTTAC GTCGTTTTGT TATTGGCGAA ACGGGATTTG GGACGGGTTT AAACTTCCTT
GCCGTGTGGC AATGCTTTAA AGAATTTCGC GCCCAATACC CTGATGCACC ACTTAAAGAA
CTTCATTTTG TTAGCTTTGA AAAATTTCCA GTCACTAAAT CTGATTTAGT TAAAGCACAC
CAAGCATGGC CAGAGTTGGC CGAATTCGCA GAGCAACTAC ATAAGTATTA CCCTGCCGCC
GTTCCTGATT GCCATCGTTT AGTACTAGAA GAAGGCATGA TAACACTCGA TCTCTGGTTT
GGTGACATAA AAGATTGTAT GCCTCAAATT TGGATGGATG ATCACGGTAT TATTGATGCA
TGGTTCTTAG ATGGTTTTGC GCCAAGTAAA AACCCTGAGA TGTGGAACCA AAATCTCTTC
GATAATATGG CAAACCTCGC GAAAGAACAC TGTACTTGTG CAACATTCAC TTCTGCGGGC
TTTGTTCGTC GAGGATTAAT AGAAGCAGGC TTTGACATGA AAAAAGTCAA AGGATTCGCT
CATAAACGAG AGATGATCGC AGGCACATTA ACGGAACGAA AAGCAAAAGC AAATCACGCA
GTTTGGTATG CCCGAACGAC TCCGAAAGAG GTTACTGATG TCGCTATTAT CGGTGGAGGC
GTTGCCAGTG CTGCACTAGC TATGACGCTG CTTCGTCGTG GTGTAAAAGT GACGGTGTAT
TGCAAAGATG AAAAAGCAGC ACAAGGTGCA TCAGGCAATC AACAAGGCGC GGTTTACCCT
CTATTAAATG AGAAATATAA TTCACTTTCT CGCTTTTTTG CTCCCGGGTT TATTTTTGCA
CGTCAATTCA TTGAACAAGC CGCTGAACAG GTCGAATTTG ATCACGATTG GTGTGGCGTA
ACTCAACTAA AATGGGACGA TAAATCAGAA AAAAAACTCA ACAAGATGCT TACTGCCCAT
TTTCCAAATG AATTAGTCAC AGAATTAAAC AAAGAAGACA CCAATCTACA CGTTGGGTTA
CCTATTAACA TGGAAAGTGT TCATTATCCT CTTGGTGGAT GGCTTTGCCC AAAACAACTC
ACTCGTGGGT TATTTGATCA TTTTGCTGCC AACCCATTAT TTACCTTACA CTGTGATTCA
GAAGTAACCT CTCTTCAACA AAGCAATGAT AAACAATGGC ATGTGTTATT AGGCGATAGC
GTACATCCAC ATCAAACCGT CATTGTCGCT AATGGGCATC GTTTCACTGA TTTTGAACAA
ACGAAAGATA TCCCTGCGAC CGCAGTTCGT GGGCAAGTGA GTCATATTCC CACCACTGAA
TCATTGAAAA AACTCAACAC CGTATTGTGC TATGACGGTT ACTTGACACC AGAAAACACC
AAATACCAAA CTCATTGTAT TGGAGCGAGT TACGATCGTC GTGATTTAGA TTTAAAATTT
AAAGAATCAG ACCAAGTTGA AAATGGTGAG CGTTTACATA AATGTATTCC TAACGAAGTA
TGGCCAAAAG AAGCAGATAC AAGCTCAAAC CAAGCTCGTG TTGGTATTCG CTGCGCCAGT
CGTGACCACT TGCCCTTCAT TGGTAATGTC GTTCGATTTG AAGCGATGCA GGAAGAATAT
AAGAACCTTT ATAAAAAGCG TCATTGGCAG CGCGATGCAA AAGAGATCCC TATCTATGAA
GGTTTATTCT GTATGTTGAC GCTGGGTTCT AGAGGCTTAA GCTCGGCTCC TTTATTAGCG
GAAACCTTAG TTTCTCAAAT AATGGGCGAT CCAATCCCAT TGCCTAATTC AGTGCTTGAA
GGTCTACATC CGGGAAGATT ATGGGTAAGA AGGTTATTGA AAGGAAAACC GTTGGATATT
TAA
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| Protein sequence | MSQNHVIPKN NITNAVLEWN ESGTPVSNDF DDVYFSNDNG LEETRYVFLQ QNHLLQRWQE
CDLRRFVIGE TGFGTGLNFL AVWQCFKEFR AQYPDAPLKE LHFVSFEKFP VTKSDLVKAH
QAWPELAEFA EQLHKYYPAA VPDCHRLVLE EGMITLDLWF GDIKDCMPQI WMDDHGIIDA
WFLDGFAPSK NPEMWNQNLF DNMANLAKEH CTCATFTSAG FVRRGLIEAG FDMKKVKGFA
HKREMIAGTL TERKAKANHA VWYARTTPKE VTDVAIIGGG VASAALAMTL LRRGVKVTVY
CKDEKAAQGA SGNQQGAVYP LLNEKYNSLS RFFAPGFIFA RQFIEQAAEQ VEFDHDWCGV
TQLKWDDKSE KKLNKMLTAH FPNELVTELN KEDTNLHVGL PINMESVHYP LGGWLCPKQL
TRGLFDHFAA NPLFTLHCDS EVTSLQQSND KQWHVLLGDS VHPHQTVIVA NGHRFTDFEQ
TKDIPATAVR GQVSHIPTTE SLKKLNTVLC YDGYLTPENT KYQTHCIGAS YDRRDLDLKF
KESDQVENGE RLHKCIPNEV WPKEADTSSN QARVGIRCAS RDHLPFIGNV VRFEAMQEEY
KNLYKKRHWQ RDAKEIPIYE GLFCMLTLGS RGLSSAPLLA ETLVSQIMGD PIPLPNSVLE
GLHPGRLWVR RLLKGKPLDI
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