Gene VSAL_I0926 details

Gene Information

• Locus tag: VSAL_I0926
• Symbol: nusB
• ID: 6989101
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1024179
• End bp: 1024646
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643379320
• Product: transcription antitermination protein NusB
• Protein accession: YP_002262423
• Protein GI: 209694495
• COG category: [K] Transcription
• COG ID: [COG0781] Transcription termination factor
• TIGRFAM ID: [TIGR01951] transcription antitermination factor NusB

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGTTA GTGTGAAACC AGCCGCACGT CGTAATGCAC GTCAATTTGC GCTTCAAGCA 
ATTTATTCAT GGCAAATAAG CAAAGAAAAT GTTGCTGCTA TTGAAGAACA GTTTTTAACT 
GCAGATAAGT ATGATGAAGA AGAGCATCAT GCAAAAGAGC CTAAACTACA AGCTCCAGAG 
ACAGATGTAG CGTACTTCCG CGATCTTTTC TCAGGTGTTG CTCTTAACCA CATTAAGTTA 
GACGGTAAAA TGCGTCCATA CTTATCTCGT CCACTTCAGG ATCTTGATCA GATGGAACTT 
GCGTTATTAC GTATGTCTAT CTATGAAATG ATGAATCGTG ACGATGTACC TTACAAAGTA 
GTTATCAATG AAGCGATTGA ACTTGCAAAA GTGTTCGCAG CAGAAGATAG CCACAAATTT 
GTAAATGGTG TATTAGATAA AGCGGCTCCA ACATTACGTA AAAAGTAA 

 

Protein sequence

MGVSVKPAAR RNARQFALQA IYSWQISKEN VAAIEEQFLT ADKYDEEEHH AKEPKLQAPE 
TDVAYFRDLF SGVALNHIKL DGKMRPYLSR PLQDLDQMEL ALLRMSIYEM MNRDDVPYKV 
VINEAIELAK VFAAEDSHKF VNGVLDKAAP TLRKK