Gene VSAL_I0924 details

Gene Information

• Locus tag: VSAL_I0924
• Symbol: ribBA
• ID: 6989097
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1022450
• End bp: 1023559
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643379318
• Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase (GTP cyclohydrolase II) (riboflavin biosynthesis protein RibBA)
• Protein accession: YP_002262421
• Protein GI: 209694493
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase; [COG0807] GTP cyclohydrolase II
• TIGRFAM ID: [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.87318
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATTA GCTCAGCAAA AGACATTATT GAAGATATTC GCTTAGGTAA GATGGTTATT 
CTGATGGATG ATGAAGATCG TGAAAATGAA GGCGATTTAA TCATTGCAGC AGAAAAAATT 
ACACCAGAAG CAATCAATTT CATGGCAACA CATGGCCGTG GTTTAATTTG TTTAACAATG 
ACAAAAGATC GCTGTGAAAA GTTAGGTCTG CCACCAATGG TGCAAGACAA TAACGCACAA 
TTTACAACTA ACTTTACGGT TTCTATTGAA GCCGCTGAAG GGGTGACTAC GGGTATTTCA 
GCAGCAGACC GTTCTCGTAC TGTTGAAGCT GCAGTTGCTA AAAATGCCGT TGCTGCTGAT 
CTTGTTCAGC CAGGCCACAT TTTCCCTCTT GCTGCACAAG AAGGCGGTGT GTTAACTCGT 
GCTGGACACA CTGAAGCGGG TTGTGATTTA GCTCGTTTAG CCGGTTTTGA ACCTGCAGGT 
GTTATCGTTG AAATCCTAAA TGATGATGGC TCTATGGCTC GTCGTCCTGA CTTGGAAATT 
TTTGCTGAAA AACACGATGT TAAATTGGGT ACGATTGCTG ACTTAATTGA ATACCGTAAT 
AATAACGAAA CAACGATTGA ACGTGTTGCT GAGTGTAAAT TACCAACAGA GTTTGGTGAT 
TTTGATCTAG TGACGTACCG TGACACGATT GATAATCAGC TTCATTATGC AATGAAAAAA 
GAAAATACAT CAGGCATTGC GCCATTAGTA CGAGTTCACC TTCAAGACAC CTTCACTGAT 
ATTCTTTATT CAGATCGTTG TGCAGAACGT AGCTGGACAT TACCAATGGC AATGCAACGT 
ATAGCGGCCG AAGGTGGTGT ACTTATTATT CTTGGTAATG AAGAATCAAC GGACAGCATT 
GTTCATAAAA TCAAAGCATT AGAGCGTCAG GATAATGGTG AGTCGCCTAC AATGGCGAAG 
AAGCAAGGTA CGTCGCGTCG CGTTGGTGTA GGCTCACAAA TCTTAGCGGA TATGGGTATC 
TCAGACATGC GTCTGCTGTC ATCTTCTTCA AAGCGCTATC ATTCATTGTC AGGCTTTGGT 
CTGAATGTAG TAGAATACGT CTCAAAATAA 

 

Protein sequence

MAISSAKDII EDIRLGKMVI LMDDEDRENE GDLIIAAEKI TPEAINFMAT HGRGLICLTM 
TKDRCEKLGL PPMVQDNNAQ FTTNFTVSIE AAEGVTTGIS AADRSRTVEA AVAKNAVAAD 
LVQPGHIFPL AAQEGGVLTR AGHTEAGCDL ARLAGFEPAG VIVEILNDDG SMARRPDLEI 
FAEKHDVKLG TIADLIEYRN NNETTIERVA ECKLPTEFGD FDLVTYRDTI DNQLHYAMKK 
ENTSGIAPLV RVHLQDTFTD ILYSDRCAER SWTLPMAMQR IAAEGGVLII LGNEESTDSI 
VHKIKALERQ DNGESPTMAK KQGTSRRVGV GSQILADMGI SDMRLLSSSS KRYHSLSGFG 
LNVVEYVSK