| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0831 |
|---|
| Symbol | nagE |
|---|
| ID | 6988877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 926109 |
|---|
| End bp | 927599 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379235 |
|---|
| Product | PTS permease for N-acetylglucosamine and glucose |
|---|
| Protein accession | YP_002262338 |
|---|
| Protein GI | 209694410 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR01998] PTS system, N-acetylglucosamine-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATATTT TAGGAAAGTT TCAAAAAGTA GGTAAAGCAC TGATGGTACC AGTTGCTACA
TTACCTGCAG CGGCCATTTT AATGGGTATT GGTTACTGGA TTGATCCGGT GGCTTGGGGC
GGCAATAGTG CATTAGCAGC GTTTTTAATC AAAGCTGGTG CGTCTATTAT TGATAACATG
TCTGTACTAT TCGCAATTGG TGTTGCTTAT GGTATGTCTA AAGATAAAGA TGGTGCAGCG
GCACTTTCTG GTTTTGTTGG TTTCCTTGTT GTAACGAATC TTCTTTCACC AGGTGCGGTA
GCTCAAATTC AAGGCATTGA TCCTGCTGCT GTTCCTGCTG CTTTTAGTAA GATCAACAAC
CAATTTGTTG GTATTTTAGT TGGTATCATA TCTGCTGAAA TTTACAACCG TTTCTCTGCT
GTTGAATTGC ATAAAACACT TGCATTCTTC TCAGGTAAAC GTCTTGTACC TATTCTAACG
TCATTTGCAG GTATTTTAAT TGCGTTCGTG CTTATGTACG TATGGCCAGC AATCTACGAT
GGTCTTGTTC ACTTCGGCGA ATCAATTCAA GGTATGGGTG CTACGGGTGC AGGTATCTAT
GCATTCTTCA ACCGTCTATT GATTCCTGTA GGTCTTCACC ATGCACTTAA CTCAGTGTTC
TGGTTCGACG TTGCTGGTAT TAACGACATC CCTAACTTCC TAGGTGGCGC TAAGTCTATC
GCTGAAGGTA CTGCAACTGT CGGTGTTACC GGTATGTACC AAGCTGGTTT CTTCCCAATC
ATGATGTTTG GTCTACCAGG CGCAGCACTA GCTATCTACC ACACTGCAAA AGTTGAGAAC
AAAGAAAAAG TAGCATCGAT TATGATCGCT GCAGGTTTCG CATCGTTCTT TACGGGTGTA
ACTGAACCTC TAGAATTCTC ATTCATGTTC CTTGCTCCTG CATTGTATGT AGTTCACGCA
GCATTGACGG GTATCTCTGT ATTCATCGCA GCATCTATGC ATTGGATTGC AGGCTTCGGT
TTCTCTGCCG GCCTAGTTGA TATGGTTCTT TCTAGTCGTA ACCCACTAGC GGTTAATTGG
TATATGCTAA TTATCCAAGG TATCGTTTTC TTCGCTCTAT ACTACTTTAT CTTCCGCGCT
GTAATCCTTA AGTTTAACCT TAAGACTCCA GGACGTGAAG ACGATGATGA AGAAGAAAGC
TCAATCCGTG GTTCTAAAGA AACTGGTGAA CTAGCTAAGC AATACCTTAA AGCGCTTGGT
GGTCACGACA ATATAGAAAA CATTGATGCT TGTATTACTC GTTTACGCTT AACTCTTAGA
GATACTAGCG TAATCAGCGA GAAGCAACTT AAAGGTCTTG GTGCAATGGG TGTTGTTAAA
CTTGGTTCAA ACAATGTTCA AGTTATCCTA GGTCCTCTTA CTGAAATCGT TGCTGGTGAA
ATGAAAAAAA TCCCAGCGTC TGAAGACTTA ACAGCAGTTG CACTACCATA A
|
|---|
| Protein sequence | MNILGKFQKV GKALMVPVAT LPAAAILMGI GYWIDPVAWG GNSALAAFLI KAGASIIDNM
SVLFAIGVAY GMSKDKDGAA ALSGFVGFLV VTNLLSPGAV AQIQGIDPAA VPAAFSKINN
QFVGILVGII SAEIYNRFSA VELHKTLAFF SGKRLVPILT SFAGILIAFV LMYVWPAIYD
GLVHFGESIQ GMGATGAGIY AFFNRLLIPV GLHHALNSVF WFDVAGINDI PNFLGGAKSI
AEGTATVGVT GMYQAGFFPI MMFGLPGAAL AIYHTAKVEN KEKVASIMIA AGFASFFTGV
TEPLEFSFMF LAPALYVVHA ALTGISVFIA ASMHWIAGFG FSAGLVDMVL SSRNPLAVNW
YMLIIQGIVF FALYYFIFRA VILKFNLKTP GREDDDEEES SIRGSKETGE LAKQYLKALG
GHDNIENIDA CITRLRLTLR DTSVISEKQL KGLGAMGVVK LGSNNVQVIL GPLTEIVAGE
MKKIPASEDL TAVALP
|
|---|
| |