| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0829 |
|---|
| Symbol | nagC |
|---|
| ID | 6986681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 923355 |
|---|
| End bp | 924569 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643379233 |
|---|
| Product | N-acetylglucosamine repressor |
|---|
| Protein accession | YP_002262336 |
|---|
| Protein GI | 209694408 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.933569 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACG GACAAATTGG TAATGTAGAT CTAGTAAAAC AATTAAACAG TGCCGCTGTT
TATCGTTTAA TCGACCAAAA AGGACCGATT TCTCGAATTC AAATCGCAGA CGTTAGTCAA
CTTGCACCAG CAAGTGTTAC CAAGATAACC CGTCAATTAT TAGAGCGTGG CTTAATTAAA
GAAGTCGCGC AACAAGCATC AACAGGTGGT CGAAGAGCAA TTTCTTTGAC TACCGAAACC
TCACCCTTTC ATTCAATCGC AGTGCGCTTA GGTCGTGATT ATATTCAACT GAGTCTGTTT
GATCTTTCAA CAAAAGAATT AGCCAGTGAA TACCAAGAAT TTCATTATAG TAACCAAGAA
CACCTTTTAG ATGGCCTAAA TAAATTACTT CAAAACTTCA TTACCCGTAA TCAAGACACC
ATCAAACAAC TCATCGCTAT TGGTATCACA CTCCCTGGTT TGGTTAACCC AGAAACGGGC
GTTGTAGAAT ATATGCCAAA TACCGATATA GACAAACTAG CATTGGCTGA CTTCATTAAA
GAAACTTTTG ATATTCAATG CTTTGTTGGT AATGATATTC GAGGTTTAGC GCTCGCTGAA
CACTATTTCG GAGCCTCTCA AGATTGCCGA GATTCTATTC TAGTGAGTGT TCATAGAGGA
ACCGGTGCTG GTATTATTGT TAATGGTAAA GTATTTCTAG GGCACAATCG AAACGTTGGA
GAAATCGGTC ATATTCAAAT CGATCCAATC GGTGATAAAT GCCAATGTGG TAACTTTGGT
TGCTTAGAAA CAGTTGCCGC AAACCCTGCA ATTATTTCAC GTATAGAAAC GTTACTTGAA
CAGGGTTATC CATCTAGTCT CTCTCAATTA GAAACGATAA CAATGTCTGA TATCTGCCAT
GCCGCAAACC ATGGAGATGA ATTAGCAATA CAGACTTTAT TACGCGTTGG TAATCAACTT
GGTAAAGCGA TTGCAATGAC TGTAAACCTA TTTAATCCAC AAAAAATAGT CATCGCAGGA
GCAATCACCC AAGCGGATAA AATAGTCTTT GCTGCAATAC AGAATTGCAT TAAAAATCAA
TCATTAACCG CTTTCCATAA AAACTTACCC GTTGTAGCCT CACAACTCGA CAACCAACCA
ACTATTGGCG CCTTCTCAAT GGTTAAGCGC GCAATGCTTA ATGGTGTCTT GTTACAAAAA
TTATTAGATG AATAA
|
|---|
| Protein sequence | MTDGQIGNVD LVKQLNSAAV YRLIDQKGPI SRIQIADVSQ LAPASVTKIT RQLLERGLIK
EVAQQASTGG RRAISLTTET SPFHSIAVRL GRDYIQLSLF DLSTKELASE YQEFHYSNQE
HLLDGLNKLL QNFITRNQDT IKQLIAIGIT LPGLVNPETG VVEYMPNTDI DKLALADFIK
ETFDIQCFVG NDIRGLALAE HYFGASQDCR DSILVSVHRG TGAGIIVNGK VFLGHNRNVG
EIGHIQIDPI GDKCQCGNFG CLETVAANPA IISRIETLLE QGYPSSLSQL ETITMSDICH
AANHGDELAI QTLLRVGNQL GKAIAMTVNL FNPQKIVIAG AITQADKIVF AAIQNCIKNQ
SLTAFHKNLP VVASQLDNQP TIGAFSMVKR AMLNGVLLQK LLDE
|
|---|
| |