Gene VSAL_I0790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0790 
SymbolprfA 
ID6988640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp876495 
End bp877583 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content43% 
IMG OID643379195 
Productpeptide chain release factor 1 
Protein accessionYP_002262300 
Protein GI209694372 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.224449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAT CAATTCGAGT AAAATTGGAA ACGCTGGTTG AGCGTTATGA AGAAGTACAG 
CATTTATTGG GGGATCCAGG TGTTATTGGT GATCAAAATA AATTCCGTGC GTTATCTCGT
GAATACTCTC AACTGGAAGA AGTAACACAA TGCTTCCAAG CGTATGAAAA AGTACAAGAA
GATCTTGTTG CTGCTCAAGA AATGGCACAG GAAGATGATG CTGAAATGCG CGAAATGGCG
CAAGACGAAA TTAAAGAAGC GAAAGAAGCA AGTGAACGTC TAACGGATGA ATTACAAGTG
CTTCTTATTC CAAAAGATCC AAATGATGAA CGTAACTGTT TCTTAGAGAT CCGTGCCGGT
GCTGGTGGTG ATGAAGCGGG TATTTTTGCG GGGAACCTTT TCCGTATGTA TTCTCGTTTT
GCTGAGAAAA AAGGGTGGCG TATTGAGGTC ATGAGTTCTC ATGCTTCAGA ACAAGGCGGC
TTTAAAGAAA TGATTGCAAA AGTAAGCGGC GATGGCGCTT ATGGTATATT GAAATTTGAA
TCAGGTGGTC ACCGAGTTCA ACGTGTACCA GAAACTGAAT CGCAAGGTCG TGTGCATACT
TCAGCGTGTA CTATTGCTGT AATGGCTGAA ATTCCAGAAG CGGATTTACC CGAGATTAAA
TCGTCTGATT TGAAAATTGA TACTTTCCGT TCATCAGGAG CTGGTGGTCA GCACGTTAAC
ACCACCGATT CCGCTATTCG TATTACTCAC TTACCAACGG GTACCGTTGT AGAGTGTCAA
GATGAGCGTT CACAGCATAA AAACAAAGCA AAAGCGATGT CGGTTCTTGC TGCCCGTATT
ATTCAAGCTG AAGAAGCTCG TCGTGCCGCA GTTGTTTCTG ATACGCGTCG TAATCTATTA
GGTTCGGGTG ACCGTTCAGA CCGTATTCGT ACGTACAACT ACCCACAAAG TCGTGTGTCT
GATCACCGTA TTAACCTGAC TATCTACCGT TTGAATGAAG TGATGGAAGG GGATCTAGCG
GCGTTGATTG AACCTGTCGT ATTAGAATAT CAAGCTGATC AACTAGCGGC TTTAGCTGAA
CAAAACTAA
 
Protein sequence
MKASIRVKLE TLVERYEEVQ HLLGDPGVIG DQNKFRALSR EYSQLEEVTQ CFQAYEKVQE 
DLVAAQEMAQ EDDAEMREMA QDEIKEAKEA SERLTDELQV LLIPKDPNDE RNCFLEIRAG
AGGDEAGIFA GNLFRMYSRF AEKKGWRIEV MSSHASEQGG FKEMIAKVSG DGAYGILKFE
SGGHRVQRVP ETESQGRVHT SACTIAVMAE IPEADLPEIK SSDLKIDTFR SSGAGGQHVN
TTDSAIRITH LPTGTVVECQ DERSQHKNKA KAMSVLAARI IQAEEARRAA VVSDTRRNLL
GSGDRSDRIR TYNYPQSRVS DHRINLTIYR LNEVMEGDLA ALIEPVVLEY QADQLAALAE
QN