| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0787 |
|---|
| Symbol | ipk |
|---|
| ID | 6989016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 873525 |
|---|
| End bp | 874391 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643379192 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_002262297 |
|---|
| Protein GI | 209694369 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00430498 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACGA CAGCAACTCG CTGGCCTTCT CCAGCTAAAC TCAATTTATT CCTGTATATA
AATGGGCAGC ATGATAATGG TTATCATGAA TTACAGACCC TTTTTCAATT TATCGATCTT
TGTGATCACC TAACGATTAC CCCTAACGAT TCAGGAGAGA TCACGCTTTC TCCTCCGATT
CCCGGTGTAG AGAAAAAAGA TAATTTAATC TGGAAAGCAG CAACGCAGCT ACAAGAACAC
ACTCTGTGTC CTCTTGGTGC TCATATTGAA CTAGAAAAAA TATTACCCAT TGGCGGTGGC
ATTGGCGGTG GTTCATCGAA TGCAGCGACA ACGTTAGTTG CACTTAATTT CTTATGGGAT
CTAAATCTCA CGAATAAAGA ATTGGCCGAT TTAGGGGTCA CTCTAGGCGC TGACGTTCCT
ATTTTTGTTC ATGGTTTTTC CGCCTTTGCA GAGGGTATTG GTGAAAAATT ACAACCGGCC
AACCCTAAAG AGTTATGGTA CGTATTAATA AAACCAGAAG TGAGTATCGC AACTGTTGAT
GTATTCTCTC ACCCAGAATT GATTAGAAAT ACAGCAAAAC AGCCACTTAA CGTACTTTTA
AGTGCCTCTT ACGAAAACGA TTGCGAAAAA ATTGTCAGAA GAGTGTATCC AGAGGTTGAT
TACCAACTTT CATGGCTGTT AGAATATGCA CCATCAAGAT TGACTGGAAC AGGCGCTTGT
GTTTTCGCTG AGTTTATTAA CGAAAAAGAA GCACAACACG TTTTTTCATT AATTCCTGAT
AACGCAACTG GATTTATCAC CCGAGGTAGA AATACTTCAC CACTCAACCA AGCGTTGGAA
GAGTATAAAT CATTATGCAA CATATAA
|
|---|
| Protein sequence | MITTATRWPS PAKLNLFLYI NGQHDNGYHE LQTLFQFIDL CDHLTITPND SGEITLSPPI
PGVEKKDNLI WKAATQLQEH TLCPLGAHIE LEKILPIGGG IGGGSSNAAT TLVALNFLWD
LNLTNKELAD LGVTLGADVP IFVHGFSAFA EGIGEKLQPA NPKELWYVLI KPEVSIATVD
VFSHPELIRN TAKQPLNVLL SASYENDCEK IVRRVYPEVD YQLSWLLEYA PSRLTGTGAC
VFAEFINEKE AQHVFSLIPD NATGFITRGR NTSPLNQALE EYKSLCNI
|
|---|
| |