| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0681 |
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| Symbol | recB |
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| ID | 6989077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 761158 |
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| End bp | 764784 |
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| Gene Length | 3627 bp |
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| Protein Length | 1208 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379080 |
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| Product | exodeoxyribonuclease V beta chain |
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| Protein accession | YP_002262198 |
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| Protein GI | 209694270 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.112115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACAA TCGCAGCTCC AAATCAATTG AATGCAATGA CGTTTCCTTT ACATGGGACA
CGTTTAATTG AAGCTTCCGC AGGTACTGGT AAAACCTTTA CCATTGCCAG TTTATATCTA
CGTTTACTAT TAGGGCATGG TGATGAGAAC AGTCGCCATA GTGAAGAATT AACCGTAGAT
AAAATACTGG TAGTGACTTT TACGGAAGCG GCAACCGCAG AATTAAGAGA ACGTATTCGA
GCTAAGATCC ATGATGCTCG TTTAGCGTTT GCTCGTGCTG TGCATAAAAG TGATTATAAG
AGTGGCGATC CCGTTATTGA CCCGTTATTA GCGGCTATTT CTGATCATAA GTCGGCAGCA
CACATATTAT TGAATGCTGA ACGCAGTATG GATGAAGCCT CAATCTTTAC CATTCATGGC
TTTTGCCAGC GCATGCTAAC CCAAAATGCC TTTGAATCTG GTGCCCAGTT CGAAAGTGAA
TTTGTCACCG ACCAAGCCAA ATTAATGCAC CAAGTGGCCG CAGATTTTTG GCGTCGTAGT
TTTTATCATC TGCCAAAAAT GGTGGCTGAA AGTGTTTACG ATTGCTGGCC AAGCCCTTCT
GCATTATTAG GTGATATGGG CAATAGTCTT ACTGGTGTCC CAAAGCATTT AACGGTTGAG
CCATTAGAGA AGTCATTAGA AGATTTCTGT CAGCAAGGCA TTGCTCGTAT TGATGAATTA
AAAAAACAGT GGTCAGAACA TTGTGTAGAT TTTGAAGCGC TAATTTCAGG TTCAGGTGTT
GATAAACGCA GTTACACTAA AAAGAATTTA CCAAATTGGT TGGATCAAGT GTCAATATGG
GCAAGTAATC CAACGACTTC GCTGCAAATT CATGACAAAT TAGAAAAGTT TTCTCAATCG
TTATTAATTG ATAAAACCAA AAAAGGCGAA GCACCAGAAC ACGCAGTATT TAAATTAATT
GATGACTTTT TAGCGCAACC ATTAGAAATA AAACAGCCGT TGTTGTCATT AGCCATTCAT
AAGTGCCGAG AAACCTTACA GCAAGCAAAA GAGCAGAAGA ACTGGTTATC GTTTGATGAC
TTGCTGACTC AATTGTCGGC TGCAACCAAA AATCAAGAGA ACGCTTTACT GCTAGAAAAG
ATCCGCGAGC AATACCCAAT TGCCTTGATT GATGAATTCC AAGATACCGA TCCACTTCAA
TATTCTATTT TTAATACCAT CTATCAAGAT CAATCACAGT GTGGTTTGTT CATGATTGGC
GATCCAAAGC AGGCTATTTA TGCTTTCCGT GGCGCAGATA TATTTACTTA TATTCAGGCT
CGTCGCCAAG TGGCGGATCA CTACACTCTT GATACTAACT GGCGATCAAC TGCCGATATG
GTGTCGTCAG TAAACCGTAT TTTTGAGCAT GGTAAACAAC CGTTTTTATA CGATGATGAT
ATTCCGTTTT ATCCGGTGAA ATATAATCCG ATTAATGCGG AACAAAAATC GTGGTCGTTA
GATAATCAAA CTCAGCCTGC AATGACGTTT TGGTTACAAG AAAGCAAAGA TGGTAACCCG
ATAAACAAAG GCAATTACCA ACGAGTAATG GCGGAATCGA CGGCGGCGCA AATTCAAACC
ATTTTGACCG GATCTCAACA AGGGTCTGCG CACCTGCAAA ATGGAGAGAA AAAAGAAGCG
ATTAAAGCCG GGAATATTGC CGTACTGGTT CGTACTGGTA AAGAAGGGAA ATTGGTTCGT
GAAGCCTTAT CAAAGCAAGG TATTGCGAGT GTTTATTTAT CTAACCGAGA CAGTGTGTTT
TCTTCTCCTT TAGCTAAAGA CATTTTACGT TTATTGCAGG CTGCAATGAC GCCAACGGAT
GCACGAGCGG TTCGTTCTGC ATTAGCCTCG TCTTTGTTTG CTTATACGGC CGATCAACTA
CATCAATTTA ATGTCGATGA AATGCAGTGG GAATTAGCCG TTAATGAGTT CCGCACCTAC
CGTAAGCATT GGTTACAACG TGGCATCATG CCTATGTTGC ATCAAATTAT TACTCAACAA
GGTATTTCAG AGCGTTTATT AGCTGAAAAT GGCGGCGAAC GTCATTTAAC TGATTTACTT
CATATTGGTG AATTATTACA ACAAACAAGC CAAACCCTCG ACAGTGATTA TGGATTGTTG
CGTTGGTTAT CTGATGCGAT TTCTGAACCT AATGGTGATG CTGAAGAGCA AACGGTACGT
TTAGAATCTG AGCGTAATTT GGTGCAGATC GTGACGATTC ATAAATCAAA AGGGTTGGAA
TACGATCTCG TCTTTTTGCC TTTTGTTTGC TCCTATCGAG CCGTGGATAA AAAAGGCGAA
GTTAGCTTTT ATGATGAAGA CAATCGTTAT TCTGTCTTAG ATTTATTAAA GGAAGATGAG
TCGGTCGAAA AAGCCGAGAA AGAACGCTTA GCAGAAGATT TACGCTTAAT TTATGTTGCG
CTAACTCGTG CTGTTTACGC TTGTTATATT GGCATGGCAC CTATCGGTAA AGGCACATCG
AAAAAACCAC CAACGGGTGT ACACCTTTCT GGTTTAGGGT ATTTAATCCA ACAAGCGGAT
GAATGTGATA TTGCTGAGCT TCAAGCGTGC CTTGAAAAAT TAATAGCAGG CAATTCGCCT
ATGGTGATCC AGTCACCTCA AACCTTAAGT GATGTGCTTT ATAAAGAGAC AGAAGACAAC
TTATTCGCAT TAACAGCCAA CAAATTGAGT AAGCCTGTGA AAAGTAATTG GTGGATGACC
AGTTATTCGG GTTTGGTGAA ACAAGGTAAC CATCATAACG ATTCGTCATT AGAATTGATT
AATTTGGATG TGGATTCCGC TGAAGATAAA GACGACAAAG AGTTAGATTT AGAGCCAGAG
CGAACGATAT TTACTTTCCC TCGTGGTGCG AGAGCGGGTA CGTTTTTACA CTCATTGTTT
GAAGAGGTTG AATTTACTCA ACCAATTAAC AGCGAAGAAA ATACACAAAT AATCATCAAG
CTATTAGAAA AAGAAAACTA CGATGTGGAA TGGTTAGACG TCGTTCAAAG CATGATGCAA
CGCGTGCTCG ATTGTCCGTT GGATGGTCAC GATTTACGAT TGGCAACCAA AGGCCCAACT
CAACGTTTGG TTGAAATGGA GTTTTTATTG CCGATAACGC TATTGAACTC AAGCTTGGTC
AATAAAACCA TCGCTAAACA CGATGAAGTC TCTGCACGTG CGGGTGAGTT AGGCTTTTCT
ACCGTGAGTG GAATGTTGAA AGGCTTTATC GATTTAGTGT TTGAGCATGA AGGCAAATAT
TACGTTCTCG ATTGGAAATC TAACCATTTA GGCGATTCTC CAGAATGCTA CGGCGGTGAC
GCTTTAATTG AAGCAATGCG AGATCATCGT TATGACTTCC AATATCAGCT GTATGCTTTA
GCGTTGCATC GATTCTTGAA AAGTCGTATT GCCGATTATA ATTACGACAC TCATTTTGGT
GGAGCGTATT ATATTTTCTT GCGTGGTATT GAAGAGAGTC ATGAGGGGCA TGATAGCAAT
TCAAATGGGG TCTTTTATTC AAAACCAAGT GAAGTGTTAT TAGAAGAATT AGAGCAATTG
GTAAATGGAG AAACAGTCGA TGCTTAA
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| Protein sequence | MTTIAAPNQL NAMTFPLHGT RLIEASAGTG KTFTIASLYL RLLLGHGDEN SRHSEELTVD
KILVVTFTEA ATAELRERIR AKIHDARLAF ARAVHKSDYK SGDPVIDPLL AAISDHKSAA
HILLNAERSM DEASIFTIHG FCQRMLTQNA FESGAQFESE FVTDQAKLMH QVAADFWRRS
FYHLPKMVAE SVYDCWPSPS ALLGDMGNSL TGVPKHLTVE PLEKSLEDFC QQGIARIDEL
KKQWSEHCVD FEALISGSGV DKRSYTKKNL PNWLDQVSIW ASNPTTSLQI HDKLEKFSQS
LLIDKTKKGE APEHAVFKLI DDFLAQPLEI KQPLLSLAIH KCRETLQQAK EQKNWLSFDD
LLTQLSAATK NQENALLLEK IREQYPIALI DEFQDTDPLQ YSIFNTIYQD QSQCGLFMIG
DPKQAIYAFR GADIFTYIQA RRQVADHYTL DTNWRSTADM VSSVNRIFEH GKQPFLYDDD
IPFYPVKYNP INAEQKSWSL DNQTQPAMTF WLQESKDGNP INKGNYQRVM AESTAAQIQT
ILTGSQQGSA HLQNGEKKEA IKAGNIAVLV RTGKEGKLVR EALSKQGIAS VYLSNRDSVF
SSPLAKDILR LLQAAMTPTD ARAVRSALAS SLFAYTADQL HQFNVDEMQW ELAVNEFRTY
RKHWLQRGIM PMLHQIITQQ GISERLLAEN GGERHLTDLL HIGELLQQTS QTLDSDYGLL
RWLSDAISEP NGDAEEQTVR LESERNLVQI VTIHKSKGLE YDLVFLPFVC SYRAVDKKGE
VSFYDEDNRY SVLDLLKEDE SVEKAEKERL AEDLRLIYVA LTRAVYACYI GMAPIGKGTS
KKPPTGVHLS GLGYLIQQAD ECDIAELQAC LEKLIAGNSP MVIQSPQTLS DVLYKETEDN
LFALTANKLS KPVKSNWWMT SYSGLVKQGN HHNDSSLELI NLDVDSAEDK DDKELDLEPE
RTIFTFPRGA RAGTFLHSLF EEVEFTQPIN SEENTQIIIK LLEKENYDVE WLDVVQSMMQ
RVLDCPLDGH DLRLATKGPT QRLVEMEFLL PITLLNSSLV NKTIAKHDEV SARAGELGFS
TVSGMLKGFI DLVFEHEGKY YVLDWKSNHL GDSPECYGGD ALIEAMRDHR YDFQYQLYAL
ALHRFLKSRI ADYNYDTHFG GAYYIFLRGI EESHEGHDSN SNGVFYSKPS EVLLEELEQL
VNGETVDA
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