Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0666 |
Symbol | clpB |
ID | 6986590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 738205 |
End bp | 740790 |
Gene Length | 2586 bp |
Protein Length | 861 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643379060 |
Product | chaperone ClpB (heat-shock protein) |
Protein accession | YP_002262184 |
Protein GI | 209694256 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00205546 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTTAG ACCGATTTAC CAGTAAATTC CAAATCGCCA TTTCAGATGC TCAATCATTA GCATTAGGTC AAGATCATCA ATATATTGAG CCGACTCATT TAATGGTGGC TTTACTAAAT CAAAACGGTA GCACGATAAG ACCATTATTG ACGTTACTTA ATGTTGATGT TACCCAATTA CGCTCAAAAT TAACGGAAAT TTTAGATAAA GCCCCAAAAG TAATTGGTAT CGGTGGTGAT GTTCAACTTT CATCAAATAT GGGGGTTATT TTTAATTTGT GTGACAAAAT TGCACAAAAA AGAAAAGACA CTTATATCTC TTCTGAAATA TTCATGCTTG CCGCGATTGA AGACAAAGGC CCATTAGGTC ATTTATTAAA AGAGTCAGGT CTTACCGAAG CTAAAATTTC AAAATCTATT GATGAGATCC GTGGTGGTGA GAAAGTAAAT GATCCTAATG CTGAAGAAAA ACGTCAGGCA TTAGAGAAGT TTACTATCGA TTTAACTGAG CAAGCTGAGC AAGGTAAATT AGATCCTGTT ATTGGGCGAG ATGATGAAAT TCGACGAACA ATTCAAGTGC TACAACGAAG AACTAAGAAT AACCCTGTAA TTATAGGTCA ACCCGGTGTA GGTAAAACGG CGATTGTTGA AGGATTAGCT CAACGAATTA TTAATGGCGA AGTACCCGAA GGGTTAAAGC ATAAAAGAGT TCTTTCGTTA GATATTGGGT CTTTAATTGC AGGAGCTAAA TTTCGAGGTG AATTCGAAGA GCGTTTAAAA GCCGTATTAA ATGAATTAGC AAAAGAAGAA GGTAATATTA TTCTTTTTAT AGATGAAGTT CATACGATGG TTGGTGCTGG TAAAGGTGAA GGGTCGATGG ATGCCGGGAA TATGCTAAAG CCGGCGTTAG CTCGAGGAGA CTTACATTGT GTTGGAGCGA CAACGTTAGA TGAATACCGT AAATATATAG AAAAAGATCC TGCATTAGAA CGACGCTTTC AAAAAGTTAT TGTTGATGAG CCAACGGTAG AAGATACGAT CGCTATATTA CGTGGCTTGA AAGAACGCTA TGAGATACAT CATCATGTCG AAATTACCGA TCCAGCAATA GTTGCTGCTG CGACATTATC ACATCGATAT ATTTCAGATA GACAGTTACC AGATAAAGCG ATTGATTTAA TCGATGAAGC GGCATCTAGT ATTCGTATGG AAATCGATTC TAAACCAGAA TCATTAGATA AACTTGAACG TAAGATCATT CAATTAAAAA TAGAACAACA AGCTTTAGTT AAAGAAAGTG ATGATGCGAG TTTAAAGCGT TTAGACTCTT TAAATTTAGA ATTAAGAGAA AAAGAAAGAG ATTACTCTGA ATTAGAAGAA ATTTGGAAAG CTGAAAAAGC AGCACTTTCT GGAACTCAAC ATATAAAAAC AGAGTTGGAC ATCGCAAGAA GTAATATGGA TATCGCTCGT AGAGCCGGTG ATTTGAATCG TATGTCTGAA TTACAATATG GCCGAATTCC TGAATTAGAA AAACAATTGG ATTTAGCTGC CCAAGCTGAA ATGCAAGAAA TGAGTTTGCT TAAGAATAAG GTAACAGACG CTGAAATAGC TGAAGTTCTT TCCCGTCAAA CTGGAATACC AGTTAATAAA ATGTTGGAAG GAGAAAGAGA TAAGCTATTA AAGATGGAAG CCATGTTGCA CCATCGAGTT ATCGGTCAAG ATGAAGCGGT TGAAGCGGTA TCAAATGCGA TTCGTCGTAG TCGAGCTGGT TTATCGGATC CTAATCGTCC TATTGGATCT TTTTTATTCT TGGGTCCTAC GGGGGTGGGG AAAACCGAAT TATGTAAATC ATTAGCAAAT TTTATGTTTG ATAGTGAAGA CGCAATGGTC CGAATTGATA TGTCGGAGTT TATGGAGAAG CATTCTGTTG CTCGATTAGT TGGCGCACCT CCTGGCTATG TAGGTTATGA AGAGGGGGGG TATTTAACTG AAGCCGTAAG GCGTAAGCCA TATTCAGTTT TACTTTTAGA TGAAGTTGAA AAGGCTCATC CAGATGTATT TAATATATTA TTACAAGTAT TAGATGATGG GCGTTTAACT GATGGTCAAG GACGTACTGT CGATTTTAAA AATACAGTAA TAATTATGAC ATCAAATTTA GGTTCAGAAA AAATACAACA GCATTTTGGT GAACTCGATT ATGGCGGTAT AAAAGAACTT GTCATGGATG TAGTTGGTCA ACATTTTAGA CCTGAATTTT TAAATAGAGT TGATGAAGCG GTTGTTTTCC ATCCATTGGG ACAGGAGAAC ATTAAAAGTA TTGCCAAAAT ACAATTGCAA CGTTTAGAAA AACGACTGAA TGAAAAAGAT TATCAGTTAA AAGTGAGTAA TGAAGCGTTA ACGTTAATAT CGGAAGCTGG TTTTGATCCT GTATATGGTG CAAGACCATT AAAAAGAGCG ATTCAAACTT ATATTGAAAA TCCGCTAGCA CAAGATATTT TAAGCGGTAA GTTAAGGACA GGGGAAGAAA TAAAACTAAA AGTAAGAAAT GGTCAGCTGA TTGCTACTCA AAATGATGAT TTTTGA
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Protein sequence | MRLDRFTSKF QIAISDAQSL ALGQDHQYIE PTHLMVALLN QNGSTIRPLL TLLNVDVTQL RSKLTEILDK APKVIGIGGD VQLSSNMGVI FNLCDKIAQK RKDTYISSEI FMLAAIEDKG PLGHLLKESG LTEAKISKSI DEIRGGEKVN DPNAEEKRQA LEKFTIDLTE QAEQGKLDPV IGRDDEIRRT IQVLQRRTKN NPVIIGQPGV GKTAIVEGLA QRIINGEVPE GLKHKRVLSL DIGSLIAGAK FRGEFEERLK AVLNELAKEE GNIILFIDEV HTMVGAGKGE GSMDAGNMLK PALARGDLHC VGATTLDEYR KYIEKDPALE RRFQKVIVDE PTVEDTIAIL RGLKERYEIH HHVEITDPAI VAAATLSHRY ISDRQLPDKA IDLIDEAASS IRMEIDSKPE SLDKLERKII QLKIEQQALV KESDDASLKR LDSLNLELRE KERDYSELEE IWKAEKAALS GTQHIKTELD IARSNMDIAR RAGDLNRMSE LQYGRIPELE KQLDLAAQAE MQEMSLLKNK VTDAEIAEVL SRQTGIPVNK MLEGERDKLL KMEAMLHHRV IGQDEAVEAV SNAIRRSRAG LSDPNRPIGS FLFLGPTGVG KTELCKSLAN FMFDSEDAMV RIDMSEFMEK HSVARLVGAP PGYVGYEEGG YLTEAVRRKP YSVLLLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFK NTVIIMTSNL GSEKIQQHFG ELDYGGIKEL VMDVVGQHFR PEFLNRVDEA VVFHPLGQEN IKSIAKIQLQ RLEKRLNEKD YQLKVSNEAL TLISEAGFDP VYGARPLKRA IQTYIENPLA QDILSGKLRT GEEIKLKVRN GQLIATQNDD F
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