Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0650 |
Symbol | rimM |
ID | 6989203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 723147 |
End bp | 723674 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643379045 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_002262169 |
Protein GI | 209694241 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.182958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGC AAGACGAAGT AATTGTTGTA GGTAAGTTCG GTGCTTCCTA TGGCATTCGT GGATGGTTGA AAGTAGTTTC TTTTACTGAT CAACCTGAAA GCATTTTCGA CTACAAACCT TTACTTATTA AAGTAAAAGA TGAGTGGGTC GAGTTTTCAG TCGAAAGCTG GAAACGTCAT AAAGGTTTGG TGTGCAAACT GGAAGGGTTA GAAGTTAGAG AAGAAGCTCA AGCTTATACT AACCTGGAAA TTGCAGTTAA AGCAGATGCA CTACCTGAGC TGTCAGAAGA TGAATTCTAC TGGCGTGAAT TGTTTGGTAT GGAAGTGGTT ACAAGCCAAG GTTACGGCCT AGGTATTGTT GACGACATCT TTGAAACCGG ATCAAACGAT GTTCTTGTAG TCAAAGCAAA CCTGAAAGAT GCTTTTGGTA AAAAGGAACG TTTGATTCCT TTTATTGATG AGCAAGTGAT CAAAGTAATT GATCGTGAGG CTCAACGGAT CGAAGTTGAC TGGGATCCTG GGTTCTAA
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Protein sequence | MSKQDEVIVV GKFGASYGIR GWLKVVSFTD QPESIFDYKP LLIKVKDEWV EFSVESWKRH KGLVCKLEGL EVREEAQAYT NLEIAVKADA LPELSEDEFY WRELFGMEVV TSQGYGLGIV DDIFETGSND VLVVKANLKD AFGKKERLIP FIDEQVIKVI DREAQRIEVD WDPGF
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