Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0626 |
Symbol | radA |
ID | 6986573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 690051 |
End bp | 691430 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643379013 |
Product | DNA repair protein RadA |
Protein accession | YP_002262145 |
Protein GI | 209694217 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1066] Predicted ATP-dependent serine protease |
TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.478337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAG CAAAACGTGC CTACGTTTGT AACGATTGTG GGGCAGACTT TCCTCGTTGG CAAGGACAGT GTAGTGCTTG TGGGGCGTGG AACACGATTA CAGAGGTTCG ATTAGCGGCT TCTCCTCAAG TGGCTAGAAA CGAACGATTG GTCGGATACT CAGGTTCTGC TACGGATTCT AAAGTTCAAA CGCTATCAAG TATTGATCTT CAAGAGGTCC CTCGTTTTAG TAGCAGCTTT AAAGAGTTTG ATCGGGTGCT TGGTGGTGGG ATTGTTCCTG GTGCGGCTAT CTTAATTGGC GGTAATCCGG GGGCTGGTAA ATCCACACTG CTGTTGCAAA CCATGTGTCG CTTAGCCAGT GAAATGCCAA CGTTGTATGT AACGGGTGAA GAATCATTAC AACAAGTCGC CATGCGAGCA TCTCGTCTTG GGCTGCCAAA AGATAATTTG AAAATGTTGT CTGAAACCAG CATTGATAAA ATTTGTCAGA TCGCAGACAA AGAAAAACCT AAAATAATGG TTATTGACTC GATTCAAGTG ATGCATGTAG ATGATGTTCA ATCGTCTCCA GGCAGTGTTG CTCAAGTTAG AGAATCAGCA ACAACACTTA CTCGTTATGC AAAACAAAAT AATGTGTCTA TATTTCTTGT GGGGCATGTA ACTAAAGATG GTTCGCTTGC AGGACCAAAA GTACTGGAGC ATATTATTGA TTGTTCTGTA TTACTTGATG GAAGTGCAGA CAGCCGATTT AGAACATTGC GTTGTAATAA AAACCGTTTT GGTGCCGTAA ATGAATTGGG CGTATTTGCA ATGACGGGGC AAGGATTGAA AGAAGTAAAT AATCCGTCTG CGATTTTTCT ATCCCGTGGC GAAGAGGAAA CGTCAGGCAG TTCTGTTATG GTTGTTTGGG AAGGGACACG CCCGTTATTG GTTGAAATTC AAGCATTAGT CGATTATTCC CAACTATCTA ATCCACGTCG AGTTTCTGTT GGGCTAGATC AAAACCGTTT GTCGATGTTA CTTGCTGTAC TTCATAAACA TGGTGGTCTG CAAATGGCGG ATCAGGATGT CTTTGTCAAT GTGGTTGGTG GCGTAAAAGT TGCAGAAACC AGTGCCGATT TAGCATTGAT AATGGCGCTA TTATCTAGCT TTAAAGATCG TCCATTACCA AAAGATGTGG TTGTTTTTGG TGAAGTAGGG CTTGCCGGTG AAATCCGTCC AGTTCCTAGT GGTCAAGAGC GTCTTATGGA AGCGTATAAA CATGGATTTA AACGCGCGAT TGTTCCTGCT GCTAATATGC CGAAAGGGGG GATTGAAGGC ATGCAAATTC ATGGCGTGAA AAAATTATCA GAGGCAATTG ATGCTTTTGA TGAACTATAA
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Protein sequence | MAKAKRAYVC NDCGADFPRW QGQCSACGAW NTITEVRLAA SPQVARNERL VGYSGSATDS KVQTLSSIDL QEVPRFSSSF KEFDRVLGGG IVPGAAILIG GNPGAGKSTL LLQTMCRLAS EMPTLYVTGE ESLQQVAMRA SRLGLPKDNL KMLSETSIDK ICQIADKEKP KIMVIDSIQV MHVDDVQSSP GSVAQVRESA TTLTRYAKQN NVSIFLVGHV TKDGSLAGPK VLEHIIDCSV LLDGSADSRF RTLRCNKNRF GAVNELGVFA MTGQGLKEVN NPSAIFLSRG EEETSGSSVM VVWEGTRPLL VEIQALVDYS QLSNPRRVSV GLDQNRLSML LAVLHKHGGL QMADQDVFVN VVGGVKVAET SADLALIMAL LSSFKDRPLP KDVVVFGEVG LAGEIRPVPS GQERLMEAYK HGFKRAIVPA ANMPKGGIEG MQIHGVKKLS EAIDAFDEL
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