Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0616 |
Symbol | |
ID | 6986569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 677973 |
End bp | 679256 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643379004 |
Product | putative sodium-dependent nucleoside transporter protein |
Protein accession | YP_002262136 |
Protein GI | 209694208 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1972] Nucleoside permease |
TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.552208 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTGT TAATGAGCTT GGTTGGGATA GTAGCGCTGC TTGCATTTGC AGTACTAATA TCTGATAACC GTAAAGCAAT CAATCTACGT ACTGTCGGTG GCGCTTTTGC CATTCAATTT ATTCTAGGTG CATTCATACT ATACGTACCT GTGGGTCGTG ATGTACTGTT AGGTGCATCT GAAGCGGTTG CGAATGTAAT CAACTACGGT AACACGGGTA TCGAATTCTT ATTCGGTGGC TTAGTATCGA ATAAAATGTT TGAAGTATTT GGTGGTGGCG GTTTCGTATT CGCACTGCGT GTACTTCCTG TAATCGTGTT CTTTGCATCA CTGACTGCGG TACTTTATTA CCTTGGTATC ATGCAAGTTG TGATTAACTT CTTAGGTGGT GCTCTTCAAA AAGCACTGGG TACTTCTCGT GCGGAATCTC TTTCTGCTAC AGCGAATATT TTCGTTGGTC AAACAGAAGC ACCTCTAGTT GTTCGTCCAT TCATTCCAAA AATGACTCAA TCAGAATTGT TTGCCGTAAT GTGTGGTGGT CTAGCTTCTG TTGCTGGTGG TGTTCTTGCT GGTTATGCGT CTATGGGCGT GCCTCTAGAG TACCTAATCG CGGCGTCATT CATGGCAGCT CCTGGTGGTC TTCTATTTGC TAAAATTCTT AAACCAGAAA CAGAAACACC GGTTGATCAA TTTGATGCAC TTGATAACAA AGGCGACGAC AAACCAGCTA ACGTAATCGA TGCAGCAGCA GCAGGCGCTG CAACAGGTAT GCAACTTGCG TTAAACGTAG GTGCAATGCT TCTTGCATTC ATCGGTCTAA TCGCTCTAAT CAACGGTATC CTAGGTGGTG TTGGTGGTTG GTTCGGTATG CCAGAAATTA CGCTAGAACT TATTCTTGGT TACGTATTCG CTCCAGTTGC TTTCCTAATC GGTGTGCCGT GGGAAGAAGC GACAGTTGCA GGTTCGTTCT TAGGTCAAAA ATTGGTAGTT AACGAATTCG TTGCTTACTT AAACTTTGCA CCTTACCTAA AAGACGTTGC TGATGGCGGC ATGTTAGTTG CACAAACTGG CGTTGAAATG TCTGAGAAAA CGAAAGCAAT CATTTCATTC GCACTATGTG GTTTTGCTAA CCTTTCTTCT GTAGCTATCC TACTTGGTGG TTTAGGTAGC CTTGCTCCTG AACGTCGTCA TGACATCGCT AAAATGGGCA TGAAAGCTGT TGCTGCTGGT ACATTATCTA ACTTAATGTC AGCAACAATC GCAGGTCTAT TCTTATCTAT CTAA
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Protein sequence | MSLLMSLVGI VALLAFAVLI SDNRKAINLR TVGGAFAIQF ILGAFILYVP VGRDVLLGAS EAVANVINYG NTGIEFLFGG LVSNKMFEVF GGGGFVFALR VLPVIVFFAS LTAVLYYLGI MQVVINFLGG ALQKALGTSR AESLSATANI FVGQTEAPLV VRPFIPKMTQ SELFAVMCGG LASVAGGVLA GYASMGVPLE YLIAASFMAA PGGLLFAKIL KPETETPVDQ FDALDNKGDD KPANVIDAAA AGAATGMQLA LNVGAMLLAF IGLIALINGI LGGVGGWFGM PEITLELILG YVFAPVAFLI GVPWEEATVA GSFLGQKLVV NEFVAYLNFA PYLKDVADGG MLVAQTGVEM SEKTKAIISF ALCGFANLSS VAILLGGLGS LAPERRHDIA KMGMKAVAAG TLSNLMSATI AGLFLSI
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