Gene VSAL_I0602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0602 
Symbolpnp 
ID6989202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp664832 
End bp666988 
Gene Length2157 bp 
Protein Length718 aa 
Translation table11 
GC content44% 
IMG OID643378990 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_002262122 
Protein GI209694194 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.597018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGTATTG AGGCCAAAGG AAAAAAAATG TTCGAGAAAC CAGTCGTAAA ATCATTCCAG 
TACGGTAACC ACACCGTAAC ACTAGAGACG GGCGTAATGG CACGTCAAGC AACTGCAGCA
GTAATGGCAA GCATGGACGA TACATCAGTA TTCGTTTCTG TTGTTGCTAA GAAAGAAGCA
GTAGCGGGTC AAGATTTCTT CCCACTAACC GTTAACTACC AAGAGCGTAC TTACGCTGCT
GGTAAAATCC CAGGTGGTTT CTTTAAGCGT GAAGGCCGTC CTTCTGAAGG CGAAACACTA
ACGGCTCGTC TAATTGACCG TCCAATTCGT CCACTTTTCC CAAGTGCGTT TAAAAACGAA
GTTCAAGTTA TCGCTACGGT TGTTTCTATC AACCCTGACG TAAACCCAGA CATGATCACT
ATGATCGCAA CGTCTGCGGC ACTTTCTATT GCTGGTGTTC CATTTAATGG TCCTATCGGT
GCTGCACGTG TTGGTCATAT CAACGGTGAG CTTGTTCTTA ACCCATCAAA CACTGAGCTT
GCAAACTCTA AACTAGACCT AGTTGTGTCT GGTACAGAAG CTGCTGTACT AATGGTTGAA
TCTGAAGCAG ATAACCTATC TGAAGAAGAA ATGCTTTCTG CTGTTGTATT TGGTCATGAC
CAACAACAAG TAGTAATCAA AGCAATCAAC GAGTTTGCTG CTGAAGTTGC AACGCCGTCT
TGGAACTGGG AAGCACCAGT AGTAAACGCA GAGCTTAAAG CACAAGTTGC TGAACTTGCA
GAAACTCGTC TTTCTGAAGC GTACCAAATT ACTGAAAAAA TGGCGCGTTA CGAGCAAGTT
GGCGCAATCA AAAGTGAAGT TGTTGCAGCA CTTCTAGTTC AAAATGAAGC ACTAGACGAA
CGTGAAATCC GCGGTATGCT TGGCGCTCTA GAGAAAAACG TAGTACGTAG CCGTATTATT
GCTGGTCACC CACGTATCGA TGGCCGTGAA AAAGACATGG TTCGTGCGCT AGACGTACGT
ACTGGTGTTC TTCCTCGTAC TCACGGTTCA GCTCTATTTA CTCGTGGTGA AACTCAAGCA
CTTGTTACTG CAACGCTTGG TACACAACGT GATGCTCAAA TCATCGATAG CTTAATGGGT
GAGAAGAAAG ATCACTTCCT TCTACACTAC AACTTTCCTC CATACTGTGT TGGTGAAACT
GGCTTTGTTG GTTCACCTAA GCGTCGTGAA ATCGGCCACG GTAAACTGGC TAAACGCGGT
ATCGCAGCAG TTATGCCTTC TGTTGAAGAA TTCCCATACA CAGTACGTGT CGTATCGGAA
ATCACTGAAT CTAACGGTTC ATCTTCAATG GCTTCTGTAT GTGGTACATC TCTAGCGCTT
ATGGATGCTG GTGTTCCAAT TAAAGCGTCT GTTGCTGGTA TCGCTATGGG TCTTGTTAAA
GAAGGCGACG ATTTCGTTGT TCTTTCTGAC ATCCTTGGCG ACGAAGATCA CCTAGGTGAC
ATGGACTTTA AAGTTGCAGG TACTAACGCT GGTATTACTG CACTTCAAAT GGACATCAAA
ATTGAAGGTA TCACTAAAGA GATCATGCAG ATCGCTCTTA ACCAGGCACA AGGTGCGCGT
AAGCATATCC TTACAGTAAT GGATGAAGCA ATCTCAGGCG CTCGTGAAGA TATCTCACAA
TACGCTCCAC GTATCCACAC AATGAAAATC AGCTCTGATA AGATCAAAGA TGTTATCGGT
AAAGGTGGCG CGGTTATCCG TGCTCTTTGT GAAGAAACGG GTACAACTAT CGAAATCGAA
GACGATGGCA CAATCAAAAT CGCTGCGACT GAAGGTGCTG CTGCGAAAGA AGCTATCCGT
CGTATCGAAG AAATTACTGC TGAAGTTGAA GTGGGTAAAA TCTACCCAGG TAAAGTTATG
CGCATCGTTG ATTTCGGTGC ATTCGTAACG GTTCTTGGTC CTAAAGAAGG TCTAGTTCAT
ATTTCTCAAA TTGCTGAAGA GCGTATTGAG AAAGTGGCAG ATCATCTACA AGTTGGTCAA
GAAGTTCAAA CTAAAGTACT AGAAATAGAC CGTCAAGGCC GTATTCGTCT AAGTATTAAA
GAAGCAACTG CAGAGCTAAA CCCTGTTGCT GCAACTGAAG TAAAAGACGC AGAATAA
 
Protein sequence
MCIEAKGKKM FEKPVVKSFQ YGNHTVTLET GVMARQATAA VMASMDDTSV FVSVVAKKEA 
VAGQDFFPLT VNYQERTYAA GKIPGGFFKR EGRPSEGETL TARLIDRPIR PLFPSAFKNE
VQVIATVVSI NPDVNPDMIT MIATSAALSI AGVPFNGPIG AARVGHINGE LVLNPSNTEL
ANSKLDLVVS GTEAAVLMVE SEADNLSEEE MLSAVVFGHD QQQVVIKAIN EFAAEVATPS
WNWEAPVVNA ELKAQVAELA ETRLSEAYQI TEKMARYEQV GAIKSEVVAA LLVQNEALDE
REIRGMLGAL EKNVVRSRII AGHPRIDGRE KDMVRALDVR TGVLPRTHGS ALFTRGETQA
LVTATLGTQR DAQIIDSLMG EKKDHFLLHY NFPPYCVGET GFVGSPKRRE IGHGKLAKRG
IAAVMPSVEE FPYTVRVVSE ITESNGSSSM ASVCGTSLAL MDAGVPIKAS VAGIAMGLVK
EGDDFVVLSD ILGDEDHLGD MDFKVAGTNA GITALQMDIK IEGITKEIMQ IALNQAQGAR
KHILTVMDEA ISGAREDISQ YAPRIHTMKI SSDKIKDVIG KGGAVIRALC EETGTTIEIE
DDGTIKIAAT EGAAAKEAIR RIEEITAEVE VGKIYPGKVM RIVDFGAFVT VLGPKEGLVH
ISQIAEERIE KVADHLQVGQ EVQTKVLEID RQGRIRLSIK EATAELNPVA ATEVKDAE