Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0602 |
Symbol | pnp |
ID | 6989202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 664832 |
End bp | 666988 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643378990 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_002262122 |
Protein GI | 209694194 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.597018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGTATTG AGGCCAAAGG AAAAAAAATG TTCGAGAAAC CAGTCGTAAA ATCATTCCAG TACGGTAACC ACACCGTAAC ACTAGAGACG GGCGTAATGG CACGTCAAGC AACTGCAGCA GTAATGGCAA GCATGGACGA TACATCAGTA TTCGTTTCTG TTGTTGCTAA GAAAGAAGCA GTAGCGGGTC AAGATTTCTT CCCACTAACC GTTAACTACC AAGAGCGTAC TTACGCTGCT GGTAAAATCC CAGGTGGTTT CTTTAAGCGT GAAGGCCGTC CTTCTGAAGG CGAAACACTA ACGGCTCGTC TAATTGACCG TCCAATTCGT CCACTTTTCC CAAGTGCGTT TAAAAACGAA GTTCAAGTTA TCGCTACGGT TGTTTCTATC AACCCTGACG TAAACCCAGA CATGATCACT ATGATCGCAA CGTCTGCGGC ACTTTCTATT GCTGGTGTTC CATTTAATGG TCCTATCGGT GCTGCACGTG TTGGTCATAT CAACGGTGAG CTTGTTCTTA ACCCATCAAA CACTGAGCTT GCAAACTCTA AACTAGACCT AGTTGTGTCT GGTACAGAAG CTGCTGTACT AATGGTTGAA TCTGAAGCAG ATAACCTATC TGAAGAAGAA ATGCTTTCTG CTGTTGTATT TGGTCATGAC CAACAACAAG TAGTAATCAA AGCAATCAAC GAGTTTGCTG CTGAAGTTGC AACGCCGTCT TGGAACTGGG AAGCACCAGT AGTAAACGCA GAGCTTAAAG CACAAGTTGC TGAACTTGCA GAAACTCGTC TTTCTGAAGC GTACCAAATT ACTGAAAAAA TGGCGCGTTA CGAGCAAGTT GGCGCAATCA AAAGTGAAGT TGTTGCAGCA CTTCTAGTTC AAAATGAAGC ACTAGACGAA CGTGAAATCC GCGGTATGCT TGGCGCTCTA GAGAAAAACG TAGTACGTAG CCGTATTATT GCTGGTCACC CACGTATCGA TGGCCGTGAA AAAGACATGG TTCGTGCGCT AGACGTACGT ACTGGTGTTC TTCCTCGTAC TCACGGTTCA GCTCTATTTA CTCGTGGTGA AACTCAAGCA CTTGTTACTG CAACGCTTGG TACACAACGT GATGCTCAAA TCATCGATAG CTTAATGGGT GAGAAGAAAG ATCACTTCCT TCTACACTAC AACTTTCCTC CATACTGTGT TGGTGAAACT GGCTTTGTTG GTTCACCTAA GCGTCGTGAA ATCGGCCACG GTAAACTGGC TAAACGCGGT ATCGCAGCAG TTATGCCTTC TGTTGAAGAA TTCCCATACA CAGTACGTGT CGTATCGGAA ATCACTGAAT CTAACGGTTC ATCTTCAATG GCTTCTGTAT GTGGTACATC TCTAGCGCTT ATGGATGCTG GTGTTCCAAT TAAAGCGTCT GTTGCTGGTA TCGCTATGGG TCTTGTTAAA GAAGGCGACG ATTTCGTTGT TCTTTCTGAC ATCCTTGGCG ACGAAGATCA CCTAGGTGAC ATGGACTTTA AAGTTGCAGG TACTAACGCT GGTATTACTG CACTTCAAAT GGACATCAAA ATTGAAGGTA TCACTAAAGA GATCATGCAG ATCGCTCTTA ACCAGGCACA AGGTGCGCGT AAGCATATCC TTACAGTAAT GGATGAAGCA ATCTCAGGCG CTCGTGAAGA TATCTCACAA TACGCTCCAC GTATCCACAC AATGAAAATC AGCTCTGATA AGATCAAAGA TGTTATCGGT AAAGGTGGCG CGGTTATCCG TGCTCTTTGT GAAGAAACGG GTACAACTAT CGAAATCGAA GACGATGGCA CAATCAAAAT CGCTGCGACT GAAGGTGCTG CTGCGAAAGA AGCTATCCGT CGTATCGAAG AAATTACTGC TGAAGTTGAA GTGGGTAAAA TCTACCCAGG TAAAGTTATG CGCATCGTTG ATTTCGGTGC ATTCGTAACG GTTCTTGGTC CTAAAGAAGG TCTAGTTCAT ATTTCTCAAA TTGCTGAAGA GCGTATTGAG AAAGTGGCAG ATCATCTACA AGTTGGTCAA GAAGTTCAAA CTAAAGTACT AGAAATAGAC CGTCAAGGCC GTATTCGTCT AAGTATTAAA GAAGCAACTG CAGAGCTAAA CCCTGTTGCT GCAACTGAAG TAAAAGACGC AGAATAA
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Protein sequence | MCIEAKGKKM FEKPVVKSFQ YGNHTVTLET GVMARQATAA VMASMDDTSV FVSVVAKKEA VAGQDFFPLT VNYQERTYAA GKIPGGFFKR EGRPSEGETL TARLIDRPIR PLFPSAFKNE VQVIATVVSI NPDVNPDMIT MIATSAALSI AGVPFNGPIG AARVGHINGE LVLNPSNTEL ANSKLDLVVS GTEAAVLMVE SEADNLSEEE MLSAVVFGHD QQQVVIKAIN EFAAEVATPS WNWEAPVVNA ELKAQVAELA ETRLSEAYQI TEKMARYEQV GAIKSEVVAA LLVQNEALDE REIRGMLGAL EKNVVRSRII AGHPRIDGRE KDMVRALDVR TGVLPRTHGS ALFTRGETQA LVTATLGTQR DAQIIDSLMG EKKDHFLLHY NFPPYCVGET GFVGSPKRRE IGHGKLAKRG IAAVMPSVEE FPYTVRVVSE ITESNGSSSM ASVCGTSLAL MDAGVPIKAS VAGIAMGLVK EGDDFVVLSD ILGDEDHLGD MDFKVAGTNA GITALQMDIK IEGITKEIMQ IALNQAQGAR KHILTVMDEA ISGAREDISQ YAPRIHTMKI SSDKIKDVIG KGGAVIRALC EETGTTIEIE DDGTIKIAAT EGAAAKEAIR RIEEITAEVE VGKIYPGKVM RIVDFGAFVT VLGPKEGLVH ISQIAEERIE KVADHLQVGQ EVQTKVLEID RQGRIRLSIK EATAELNPVA ATEVKDAE
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