| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0586 |
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| Symbol | carB |
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| ID | 6988302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 644631 |
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| End bp | 647861 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643378971 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_002262106 |
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| Protein GI | 209694178 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.221423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACTGACAT TAAAAGCGTT CTAATTCTAG GTGCAGGCCC AATCGTAATC
GGCCAAGCAT GTGAATTTGA CTACTCTGGT GCACAAGCGT GTAAAGCTCT TCGTGAAGAA
GGCTACCGCG TTATTCTTGT GAACTCTAAT CCAGCAACAA TCATGACTGA CCCAGACATG
GCTGATGCAA CCTACATTGA ACCAATCCAT TGGGAAGTGG TTCGTAACAT CATCGAAAAA
GAACGTCCAG ATGCAGTACT GCCTACGATG GGTGGTCAAA CGGCATTGAA CTGTGCGCTT
GATTTAGAGA GACACGGTGT TCTTGCTGAG TTCGGTGTTG AGATGATTGG TGCAACGGCA
GATGCGATTG ATAAAGCAGA AGACCGTTCA CGCTTTGATA AAGCAATGAA GTCGATTGGC
CTTGAATGTC CAAACGCTGA TACCGCAAAA ACAATGGAAG AAGCTTACAA AGTTTTAGAC
ATGGTAGGTT TCCCTTGTAT CATTCGTCCA TCATTTACGA TGGGTGGTAC GGGCGGTGGT
ATCGCGTATA ACAAAGAAGA ATTTGAAGAA ATTTGTCGCG GTGGTTTGGA TCTATCTCCA
ACCAATGAGC TTTTAATCGA TGAATCATTA ATCGGTTGGA AAGAGTACGA GATGGAAGTG
GTTCGTGATA AAAACGACAA CTGCATCATC GTATGTACAA TTGAAAACTT TGATGCAATG
GGCATTCATA CTGGTGATTC AATTACCGTC GCTCCGGCAC AAACACTAAC AGATAAAGAG
TACCAATTAA TGCGTAATGC TTCTTTAGCA GTACTGCGTG AGATTGGTGT TGAAACGGGT
GGGTCAAACG TTCAGTTTGG TATTAACCCG AAAGACGGCC GCATGGTTGT TATCGAAATG
AACCCACGTG TATCGCGTTC ATCAGCTCTA GCGTCTAAAG CAACTGGTTT CCCTATTGCA
AAAATCGCAG CTAAATTAGC GATTGGCTAT ACGCTTGATG AGTTAATGAA TGACATTACT
GGTGGTGCAA CTCCAGCATC ATTTGAACCA ACAATCGATT ATGTTGTTAC TAAGATCCCT
CGTTTCAACT TCGAAAAATT CGCAGGTGCT AATGATCGTC TAACAACGCA AATGAAATCT
GTTGGTGAAG TAATGGCTAT TGGCCGTAAT CAACAAGAAT CACTGCAAAA AGCACTCCGT
GGCTTAGAAG TTGGCGCGGA TGGTTTTGAT GAAATGGTTG ATCTTGATGC GCCTGACGCA
TTAACAAAGA TCCGTCATGA ATTAAAAGAC GCAGGTGCTG AGCGTATCTG GTACATCGCG
GACGCATTCC GTGCCGGTAT GTCTATTGAT GGTGTGTTTA ACCTAACGAA TGTTGACCGT
TGGTTCTTGG TACAAATCGA AGATTTAGTT AAGATGGAAG CAGAAGTTAA AGCGGGCGGT
TTCGCTAGCT TAACTGCGGA TAGCCTTCGT CAATTAAAAC GTAAAGGCTT TGCTGATGCT
CGTCTATCTA AGTTATTAGG TGTTGCTGAA AGTGAAATCC GTCGTCTTCG TGACCAGTAT
GATATTCATC CTGTCTACAA GCGTGTAGAT ACGTGTGCTG CTGAATTTTC TTCGGATACT
GCTTACATGT ATTCAACGTA TGATGAAGAA TGTGAATCGA ATCCAACCGA CAATGATAAG
ATCATGATCT TAGGTGGCGG TCCAAACCGT ATCGGCCAAG GTATTGAATT TGATTATTGT
TGTGTACACG CATCATTAGC ACTTCGTGAA GATGGCTATG AAACGATCAT GGTTAACTGT
AACCCTGAGA CCGTTTCTAC TGATTACGAT ACGTCTGACC GCTTGTACTT TGAACCAGTA
ACACTGGAAG ATGTATTAGC CATCGTTCGT ATTGAAAAAC CAAAAGGCGT TATCGTTCAG
TACGGTGGTC AAACACCACT TAAACTGGCT CGTGCTCTTG AAGCTGCCGG TGTTCCGATT
ATCGGTACAA GCCCTGATGC TATCGACCGT GCAGAAGACC GTGAGCGCTT CCAAGTTGCA
GTAGACCGTC TAGGCCTTCT ACAGCCAGAA AATGCAACGG TAACGGCAAT GGAACAAGCG
ATTGAAAAAT CAAGAGAAAT TGGTTTCCCA TTAGTTGTTC GTCCTTCTTA TGTTCTTGGT
GGTCGTGCGA TGGAAATCGT ATATGACGAG CAAGACTTGC GTCGCTACTT TAACGAAGCA
GTAAGCGTTT CAAATGAATC ACCAGTTCTA CTTGATAGCT TCCTAGATGA TGCCATCGAA
GTCGATGTAG ATGCTATCTG CGACGGTGAG CAAGTGGTTA TCGCTGGTAT TATGGAGCAT
ATCGAACAAG CCGGTGTTCA CTCTGGTGAC TCAGCATGTT CTCTTCCTGC TTATACATTA
AGTGAAGAAA TCCAAGACGT AATGCGTGAT CAAGTACGTA AGCTAGCATT TGAGCTAGGT
GTGCGTGGCT TAATGAATAC TCAGTTTGCG GTTAAGAATA ACGAAGTTTA CTTAATTGAA
GTTAACCCAC GAGCGGCACG TACGATCCCA TTCGTATCTA AAGCTACCGG TGCTCCAATC
GCTAAGATTG CAGCACGTGT AATGGCGGGT CAATCGTTAG AATCTCAAGG CTTTACTAAA
GAGATTATCC CACCATACTA CTCAGTAAAA GAGGTGGTAT TACCGTTCAA CAAATTCCCA
GGCGTTGATC CATTGTTAGG CCCTGAAATG CGCTCAACGG GTGAAGTGAT GGGGGTTGGT
AATACGTTTG CAGAAGCCTT TGCTAAAGCT GAATTAGGGT GCAGTAAAGA GTACCCAGAA
GGCGGTCGAG CATTACTTTC TGTTCGTGAT GGTGATAAGA AGCGTGTTGT CGATTTGGCA
AAACACCTTG TTAAAATTGG TTATCAATTA GACGCAACGC ACGGTACTGC TGTGATTCTT
GGTGAAGCGG GTATTAATCC TCGTTTAGTC AACAAGGTAC ACGAAGGTCG TCCTCACATT
CTTGACCGTA TTAAGAATGG TGAATATACC TACATTGTAA ACACGGCATC TGGTCGTCAA
GCGATTGAAG ACTCTAAACT TCTTCGTCGT GGCGCTCTCG CGGGTAAAGT GAACTACACA
ACAACATTAA ATGCAGCATT TGCAAGTTGT CTAGCTCATG AAGCGGATGA TCGTAATACG
ATTAACTCCC TGCAAGAATT GCACGCAAGA GTAGCGGCTA AATACGCTTA G
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| Protein sequence | MPKRTDIKSV LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPDM
ADATYIEPIH WEVVRNIIEK ERPDAVLPTM GGQTALNCAL DLERHGVLAE FGVEMIGATA
DAIDKAEDRS RFDKAMKSIG LECPNADTAK TMEEAYKVLD MVGFPCIIRP SFTMGGTGGG
IAYNKEEFEE ICRGGLDLSP TNELLIDESL IGWKEYEMEV VRDKNDNCII VCTIENFDAM
GIHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP KDGRMVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAIGY TLDELMNDIT GGATPASFEP TIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRN QQESLQKALR GLEVGADGFD EMVDLDAPDA
LTKIRHELKD AGAERIWYIA DAFRAGMSID GVFNLTNVDR WFLVQIEDLV KMEAEVKAGG
FASLTADSLR QLKRKGFADA RLSKLLGVAE SEIRRLRDQY DIHPVYKRVD TCAAEFSSDT
AYMYSTYDEE CESNPTDNDK IMILGGGPNR IGQGIEFDYC CVHASLALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLAIVR IEKPKGVIVQ YGGQTPLKLA RALEAAGVPI
IGTSPDAIDR AEDRERFQVA VDRLGLLQPE NATVTAMEQA IEKSREIGFP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNESPVL LDSFLDDAIE VDVDAICDGE QVVIAGIMEH
IEQAGVHSGD SACSLPAYTL SEEIQDVMRD QVRKLAFELG VRGLMNTQFA VKNNEVYLIE
VNPRAARTIP FVSKATGAPI AKIAARVMAG QSLESQGFTK EIIPPYYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG NTFAEAFAKA ELGCSKEYPE GGRALLSVRD GDKKRVVDLA
KHLVKIGYQL DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTASGRQ
AIEDSKLLRR GALAGKVNYT TTLNAAFASC LAHEADDRNT INSLQELHAR VAAKYA
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