Gene VSAL_I0581 details

Gene Information

• Locus tag: VSAL_I0581
• Symbol: lspA
• ID: 6988704
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 640011
• End bp: 640526
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643378966
• Product: lipoprotein signal peptidase
• Protein accession: YP_002262101
• Protein GI: 209694173
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0597] Lipoprotein signal peptidase
• TIGRFAM ID: [TIGR00077] lipoprotein signal peptidase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0620136
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTAGCG ATAATAAGAC ATTACCGCTG CTTAAAGAAT CTGGACTTCG CTGGCTATGG 
CTAGCGGGGT TGGTTTTTAT GGCAGACATC AGCATTAAGT TATTTGTGAT GAAAGAGATG 
ACTTATGGTT GGGCGAACCG AATTGAAGTT TTGCCTTTCT TTAATTTTCT TTACGCTCAT 
AACTATGGTG CTGCATTTAG CTTTTTAAGT GATCAAGCCG GTTGGCAACG CTGGTTTTTT 
ACCGGTATTG CTATCGTTGT ATGTGGTTTA CTTGCCTATT GGATGCGCAA AGCACCACAA 
ACGGACAAGT TAAATAACAT CGCGTATGCA CTGATCATTG GTGGTGCGAT TGGTAATGTG 
TTTGATCGCT TAGTTCATGG TTTTGTAGTG GATTATCTTG ATTTCTATTG GGGTAGTTAC 
CATTGGCCAA CGTTCAACTT AGCGGATGCT GCGATTTGTA TTGGTGCGGG ATTGATCATC 
TTAGATGGGT TTCGTTCTAA TAAAAAAGAA CAATAA 

 

Protein sequence

MTSDNKTLPL LKESGLRWLW LAGLVFMADI SIKLFVMKEM TYGWANRIEV LPFFNFLYAH 
NYGAAFSFLS DQAGWQRWFF TGIAIVVCGL LAYWMRKAPQ TDKLNNIAYA LIIGGAIGNV 
FDRLVHGFVV DYLDFYWGSY HWPTFNLADA AICIGAGLII LDGFRSNKKE Q