Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0575 |
Symbol | nhaR |
ID | 6988906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 632642 |
End bp | 633583 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643378960 |
Product | transcriptional activator NhaR |
Protein accession | YP_002262095 |
Protein GI | 209694167 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000414941 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTATC TTTTGGAAAA GATCAATGTA GGAACCGTTA TGTCACATTT AAACTATAAC CATCTTTATT ATTTTTGGAT GGTGTGCAAA CAAGGATCGG TAACTAAAGC TGCTGAAGCA TTATTTTTAA CGCCTCAAAC GGTGACTGGA CAAATCAAGG CATTGGAAGA ACGCGTTGAT GGCAAATTAA CGAAACGTAA TGGACGTAAC ATTGAGCCAA CAGAATTAGG GCAATTAATT TATAAATACG CCGATCGTAT GTTTGGCCTT AGTTATGAGA TGTTAGATAT CGTTAATTAT AGTCAACAAT CAAATGTGCT ATTTGATGTT GGCGTTGCTG ATGCTCTTTC TAAACGATTA GTGAGTAAAG TTCTTTCAAC CACGATTCCT GAAGATGCAT CAATACATCT TCGCTGCTTT GAATCGACCC ATGAATTGCT ACTTGAACAG TTATCTCAGC ATAAATTAGA TATGATCTTA TCGGATTGCC CTGTTGACTC AAGCCAGAAT TCTGGACTTT TCAGCAAAAA ATTGGGTGAA TGTGGAATGA GTTTTTTCTG CTCTAAAGAA ATGACGGATA TTCAATTCCC AGAAGTATTA GAGATAAAAA AGGTACTGAT CCCTGGCAGT CGAACATCAA TGGGAAGAAA GGTGGTTCAG TGGTGCGATC AGCAAGGTAT TACGCCTAAT ATCTTAGGGG AATTTGATGA CGTTGCTCTA ATGAAGGCCT TTGCCCGTGA GAATGACTCT GTATTTTTAG CCCCAACGGT TTATATGAAT GAGGCTGATT CTGATCTTTC TTTGCACCGA ATCGCTGACG TAAAAGATTT AAAAGAAGAA TATTACGTTA TTTTTGCAGA ACGAATGATT CAGCATCCGG CAGTAAAAAG TATTTGTGAA GCTGATTTTT CACAGTTATT TGATTTTAAT TTGCAAAAAT AG
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Protein sequence | MTYLLEKINV GTVMSHLNYN HLYYFWMVCK QGSVTKAAEA LFLTPQTVTG QIKALEERVD GKLTKRNGRN IEPTELGQLI YKYADRMFGL SYEMLDIVNY SQQSNVLFDV GVADALSKRL VSKVLSTTIP EDASIHLRCF ESTHELLLEQ LSQHKLDMIL SDCPVDSSQN SGLFSKKLGE CGMSFFCSKE MTDIQFPEVL EIKKVLIPGS RTSMGRKVVQ WCDQQGITPN ILGEFDDVAL MKAFARENDS VFLAPTVYMN EADSDLSLHR IADVKDLKEE YYVIFAERMI QHPAVKSICE ADFSQLFDFN LQK
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