Gene VSAL_I0575 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0575 
SymbolnhaR 
ID6988906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp632642 
End bp633583 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content37% 
IMG OID643378960 
Producttranscriptional activator NhaR 
Protein accessionYP_002262095 
Protein GI209694167 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000414941 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGTATC TTTTGGAAAA GATCAATGTA GGAACCGTTA TGTCACATTT AAACTATAAC 
CATCTTTATT ATTTTTGGAT GGTGTGCAAA CAAGGATCGG TAACTAAAGC TGCTGAAGCA
TTATTTTTAA CGCCTCAAAC GGTGACTGGA CAAATCAAGG CATTGGAAGA ACGCGTTGAT
GGCAAATTAA CGAAACGTAA TGGACGTAAC ATTGAGCCAA CAGAATTAGG GCAATTAATT
TATAAATACG CCGATCGTAT GTTTGGCCTT AGTTATGAGA TGTTAGATAT CGTTAATTAT
AGTCAACAAT CAAATGTGCT ATTTGATGTT GGCGTTGCTG ATGCTCTTTC TAAACGATTA
GTGAGTAAAG TTCTTTCAAC CACGATTCCT GAAGATGCAT CAATACATCT TCGCTGCTTT
GAATCGACCC ATGAATTGCT ACTTGAACAG TTATCTCAGC ATAAATTAGA TATGATCTTA
TCGGATTGCC CTGTTGACTC AAGCCAGAAT TCTGGACTTT TCAGCAAAAA ATTGGGTGAA
TGTGGAATGA GTTTTTTCTG CTCTAAAGAA ATGACGGATA TTCAATTCCC AGAAGTATTA
GAGATAAAAA AGGTACTGAT CCCTGGCAGT CGAACATCAA TGGGAAGAAA GGTGGTTCAG
TGGTGCGATC AGCAAGGTAT TACGCCTAAT ATCTTAGGGG AATTTGATGA CGTTGCTCTA
ATGAAGGCCT TTGCCCGTGA GAATGACTCT GTATTTTTAG CCCCAACGGT TTATATGAAT
GAGGCTGATT CTGATCTTTC TTTGCACCGA ATCGCTGACG TAAAAGATTT AAAAGAAGAA
TATTACGTTA TTTTTGCAGA ACGAATGATT CAGCATCCGG CAGTAAAAAG TATTTGTGAA
GCTGATTTTT CACAGTTATT TGATTTTAAT TTGCAAAAAT AG
 
Protein sequence
MTYLLEKINV GTVMSHLNYN HLYYFWMVCK QGSVTKAAEA LFLTPQTVTG QIKALEERVD 
GKLTKRNGRN IEPTELGQLI YKYADRMFGL SYEMLDIVNY SQQSNVLFDV GVADALSKRL
VSKVLSTTIP EDASIHLRCF ESTHELLLEQ LSQHKLDMIL SDCPVDSSQN SGLFSKKLGE
CGMSFFCSKE MTDIQFPEVL EIKKVLIPGS RTSMGRKVVQ WCDQQGITPN ILGEFDDVAL
MKAFARENDS VFLAPTVYMN EADSDLSLHR IADVKDLKEE YYVIFAERMI QHPAVKSICE
ADFSQLFDFN LQK