Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0560 |
Symbol | |
ID | 6986553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 614058 |
End bp | 615371 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643378946 |
Product | branched chain amino acid transport system II carrier protein |
Protein accession | YP_002262081 |
Protein GI | 209694153 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1114] Branched-chain amino acid permeases |
TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAACAAT CACTAAAACT AACCGATATC ATAGCCGTTG GCTTTATGCT TTTTGCCTTC TTTTTAGGTG CAGGCAACAT TATATTTCCA CCAATTGCAG GTCAGATGGC CGGTGAACAT GTTTACAGTG CAATGGGGGG GTTCCTTATT ACTGCGGTAG GTTTACCTCT TATGACCATT ATTACTATTG GTGTAGCCGG TGGATCTTGG CAGCAACTTA CTCGTGATTT ACCACCAAAA GTAGCGATTA TTATGGCTAT TTTGATGTTT GTTATCATTG GGCCTGCATT TGCTGCCCCT CGTACAGGTT TAGTTGCTTA TGAAATGGCT GCAAAACCAT TTATGTCTGC TGATGCCGGA CAAATATCAT TAACACTATT CTCAATCGCA TTCTTCTCAA TCGCAATGTT TTTTGCCTGG TCGCAAGGTA AGCTTATCGA TACGATTGGT AAGTTTTTAA CGCCGGCATT ATTCATTGGT TTAATCATTT TAGCGATTGC GGTATTTGTT AATCCACAAG GTGAGATTGT TGCAGCAACA GGGAACTATA TCAATCAACC ATTAACGACT GGTTTCTTTG AAGGTTATAA CACCATGGAT ACGTTTGGTG CGTTAATGTT TGGTATTTTA ATGATTGATG CATTAAAAAA GAAAGGCATT ACAGATCATA AAGCGACCAC AAAATATTTA ACCGCAGCAG GTTGTATTGC GGCATTAGGC CTAGCATTTG TTTATGTCTC TTTATTCTAC CTTGGTGCGA CGTCTAGCTC TGTTGCTCCA GGTGCAACAA ATGGCGGTGA GATTTTAACT GCATATACTC ATGCGCTATT TGGATCTTCT GGCCAAATCG TATTGTCTAT TATAGTTATG ATCGCTTGTT TAACGACGGC TATTGGTCTT ATTTCCGCTT GTGCTGATTA CTTTAGTTCA ATTTGTAAGG TGACTTATAA AACATGGGTT ATTGTTGTTG GTGTCGCTTG CGCTATTGTT GCTAATGTTG GTCTAACTCA GCTTATAGCA TTATCGGTAC CAGTATTATT CCTACTTTAC CCTATTGCGA TGGCTCTGAT TGTTTTAGCA TTTTTACGTC ATATGATGCC GAATCCTCGT CTGGCATACC GTGTCGTTGT TACTGTTGCA ACTTGCTTTG CTGTATTAGA TGCGGCGAAA GTGGCGGGTG CAGATATGTC GGCATTCTCG ATGCTACCAA TGTTTGATCG CGGTATGGCT TGGGTTATCC CTACGTTCGC TTCAATTATC ATTGTTCGTT TTATTGGTAA GAAAGAAGAC GAGTTAGTGA CTAAAGAAGT GTAA
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Protein sequence | MKQSLKLTDI IAVGFMLFAF FLGAGNIIFP PIAGQMAGEH VYSAMGGFLI TAVGLPLMTI ITIGVAGGSW QQLTRDLPPK VAIIMAILMF VIIGPAFAAP RTGLVAYEMA AKPFMSADAG QISLTLFSIA FFSIAMFFAW SQGKLIDTIG KFLTPALFIG LIILAIAVFV NPQGEIVAAT GNYINQPLTT GFFEGYNTMD TFGALMFGIL MIDALKKKGI TDHKATTKYL TAAGCIAALG LAFVYVSLFY LGATSSSVAP GATNGGEILT AYTHALFGSS GQIVLSIIVM IACLTTAIGL ISACADYFSS ICKVTYKTWV IVVGVACAIV ANVGLTQLIA LSVPVLFLLY PIAMALIVLA FLRHMMPNPR LAYRVVVTVA TCFAVLDAAK VAGADMSAFS MLPMFDRGMA WVIPTFASII IVRFIGKKED ELVTKEV
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