Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0544 |
Symbol | pilT |
ID | 6986547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 597733 |
End bp | 598770 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378930 |
Product | twitching mobility protein PilT, type II/IV secretion system protein |
Protein accession | YP_002262065 |
Protein GI | 209694137 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATATCA CAGAACTACT GGACTTTAGT GTAAAACAAA ACGCATCAGA TCTACACCTA TCTGCAGGAG TTCCTCCTAT GGTACGTGTT GATGGTGAGG TTCGTAAACT CACATTACCT GATTTTACCC ACGCTGATGT TCATCGCTTA GTGACTGATT TCATGAATGA TGCTCAACGA AGTGAGTTTG AAGAAAAGTT AGAAGTTGAT TTTTCTTTTG AGCTTCCGAG TGTGGGGCGT TTTCGTGTGA ATGCGTTTAA TCAATCACGA GGTTGTGCCG CTGTCTTTAG AACGATCCCT GTTGAGGTGC CTTCTCTTGA TCAATTAGAT GTCCCTGATA TTTTTCTTGA TATCGCAAAA TATCAAAAAG GGTTGGTATT AATTACAGGG CCGACGGGAT CGGGTAAATC AACAACATTA GCGGCGATGG TTGATTACGT TAATGAACAT CATAATAAGC ACATTCTCAC GATCGAAGAT CCGATTGAGT TTGTTCATAA AAATAAAAAA TGTTTGATTA ACCAACGTGA AGTTCATCGT GATACTCACA GTTTTAAAGC GGCATTACGA TCGGCATTGC GTGAGGATCC TGATGTCATT CTTGTGGGGG AATTGCGAGA TCAAGAGACA ATCAGTCTTG CATTAACAGC AGCGGAAACC GGACACCTCG TGTTTGCTAC GTTACACACC AGTTCTGCGG CAAAAACCAT TGACCGTATT ATTGATGTAT TTCCTGGCAG TGATAAATCG ATGGTGCGTT CAATGTTGTC GGAATCATTA AGAGCCGTGG TGGCTCAAAC GTTATTAAAA CGAATTGGTG GTGGACGAAT TGCTTGTCAT GAGATAATGA TAGCAACCCC TGCAATACGT AACTTAATCC GAGAAGATAA AGTCGCTCAG ATGTATTCAA TCATTCAGAC TGGTTCCGCT TTTGGAATGC AAACCATGGA GCAAAATGCA AAGAAAATTA TTGCTCAAGG GTTAGTTGAC CCTGATGAAG TTGCAAAGAA AGTTGAAATA ACCAGTATGG GTTTTTAA
|
Protein sequence | MDITELLDFS VKQNASDLHL SAGVPPMVRV DGEVRKLTLP DFTHADVHRL VTDFMNDAQR SEFEEKLEVD FSFELPSVGR FRVNAFNQSR GCAAVFRTIP VEVPSLDQLD VPDIFLDIAK YQKGLVLITG PTGSGKSTTL AAMVDYVNEH HNKHILTIED PIEFVHKNKK CLINQREVHR DTHSFKAALR SALREDPDVI LVGELRDQET ISLALTAAET GHLVFATLHT SSAAKTIDRI IDVFPGSDKS MVRSMLSESL RAVVAQTLLK RIGGGRIACH EIMIATPAIR NLIREDKVAQ MYSIIQTGSA FGMQTMEQNA KKIIAQGLVD PDEVAKKVEI TSMGF
|
| |