Gene VSAL_I0544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0544 
SymbolpilT 
ID6986547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp597733 
End bp598770 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content41% 
IMG OID643378930 
Producttwitching mobility protein PilT, type II/IV secretion system protein 
Protein accessionYP_002262065 
Protein GI209694137 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATCA CAGAACTACT GGACTTTAGT GTAAAACAAA ACGCATCAGA TCTACACCTA 
TCTGCAGGAG TTCCTCCTAT GGTACGTGTT GATGGTGAGG TTCGTAAACT CACATTACCT
GATTTTACCC ACGCTGATGT TCATCGCTTA GTGACTGATT TCATGAATGA TGCTCAACGA
AGTGAGTTTG AAGAAAAGTT AGAAGTTGAT TTTTCTTTTG AGCTTCCGAG TGTGGGGCGT
TTTCGTGTGA ATGCGTTTAA TCAATCACGA GGTTGTGCCG CTGTCTTTAG AACGATCCCT
GTTGAGGTGC CTTCTCTTGA TCAATTAGAT GTCCCTGATA TTTTTCTTGA TATCGCAAAA
TATCAAAAAG GGTTGGTATT AATTACAGGG CCGACGGGAT CGGGTAAATC AACAACATTA
GCGGCGATGG TTGATTACGT TAATGAACAT CATAATAAGC ACATTCTCAC GATCGAAGAT
CCGATTGAGT TTGTTCATAA AAATAAAAAA TGTTTGATTA ACCAACGTGA AGTTCATCGT
GATACTCACA GTTTTAAAGC GGCATTACGA TCGGCATTGC GTGAGGATCC TGATGTCATT
CTTGTGGGGG AATTGCGAGA TCAAGAGACA ATCAGTCTTG CATTAACAGC AGCGGAAACC
GGACACCTCG TGTTTGCTAC GTTACACACC AGTTCTGCGG CAAAAACCAT TGACCGTATT
ATTGATGTAT TTCCTGGCAG TGATAAATCG ATGGTGCGTT CAATGTTGTC GGAATCATTA
AGAGCCGTGG TGGCTCAAAC GTTATTAAAA CGAATTGGTG GTGGACGAAT TGCTTGTCAT
GAGATAATGA TAGCAACCCC TGCAATACGT AACTTAATCC GAGAAGATAA AGTCGCTCAG
ATGTATTCAA TCATTCAGAC TGGTTCCGCT TTTGGAATGC AAACCATGGA GCAAAATGCA
AAGAAAATTA TTGCTCAAGG GTTAGTTGAC CCTGATGAAG TTGCAAAGAA AGTTGAAATA
ACCAGTATGG GTTTTTAA
 
Protein sequence
MDITELLDFS VKQNASDLHL SAGVPPMVRV DGEVRKLTLP DFTHADVHRL VTDFMNDAQR 
SEFEEKLEVD FSFELPSVGR FRVNAFNQSR GCAAVFRTIP VEVPSLDQLD VPDIFLDIAK
YQKGLVLITG PTGSGKSTTL AAMVDYVNEH HNKHILTIED PIEFVHKNKK CLINQREVHR
DTHSFKAALR SALREDPDVI LVGELRDQET ISLALTAAET GHLVFATLHT SSAAKTIDRI
IDVFPGSDKS MVRSMLSESL RAVVAQTLLK RIGGGRIACH EIMIATPAIR NLIREDKVAQ
MYSIIQTGSA FGMQTMEQNA KKIIAQGLVD PDEVAKKVEI TSMGF