Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0496 |
Symbol | ptsN |
ID | 6986522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 556789 |
End bp | 557235 |
Gene Length | 447 bp |
Protein Length | 148 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643378876 |
Product | nitrogen regulatory IIA protein, PTS system |
Protein accession | YP_002262019 |
Protein GI | 209694091 |
COG category | [G] Carbohydrate transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.337955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCTAA GCACCATTCT TTCATTGGAT TGCACCAAAA GTGCAGTCCA GTGTACTAGC AAGAAACGCG CACTAGAATT GATCAGTGAA ATTGCAGCAC CTCAACTGGG TCAAAATCCA CAAGCGCTTT TTGAAAGCTT ATTAAATCGT GAAAAAATGG GAAGTACAGG CATCGGCAAT GGCATTGCTA TCCCCCACGG TCGACTTCAT AATTGTGATA CTGCGGTAGC GGTATTAATC CAATGCCAAG AACCTATAGA GTTTGATTCT ATTGATAATC GTCCTGTTGA TGTTCTTTTT GCTTTACTTG TTCCTGATGA ACAATGCAAA TTACACCTCA AAACACTGTC TAGTGTGGCT GAAAAACTCA ATGACAAACA GATCTTACGT CAGCTTCGTC ATGCTGAAAG CGATCAAGAG TTGTATCAAA TTTTCACATC TGAATAG
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Protein sequence | MQLSTILSLD CTKSAVQCTS KKRALELISE IAAPQLGQNP QALFESLLNR EKMGSTGIGN GIAIPHGRLH NCDTAVAVLI QCQEPIEFDS IDNRPVDVLF ALLVPDEQCK LHLKTLSSVA EKLNDKQILR QLRHAESDQE LYQIFTSE
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