| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0477 |
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| Symbol | mshA |
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| ID | 6988836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 533617 |
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| End bp | 534087 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378858 |
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| Product | type IV pilus, mannose-sensitive hemagglutinin A |
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| Protein accession | YP_002262001 |
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| Protein GI | 209694073 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.581973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAC AAGGTGGTTT CACCCTTATT GAGTTAGTAG TTGTTATCGT TATTCTAGGT
ATTCTTGCAG TAACGGCGGC ACCTAAATTT TTAAACCTTC AAGGTGATGC ACGTAAGTCG
TCTTTACAAG GATTAAAAGG CGCAATGTCT GGCGCATCAG GTATCGTTTA TGGTAAATCG
GCTATCAATG GTGTTGAAGG TGCTATATCT GGTTCTGTAG ACTCTATTGA TGTTGCATTT
GGCTACCCTA CTGCAACTTC AGCTGGTATT GCTACTGCTG TTGTAGGACT AAGTGACGAT
TGGACTTCTT TCCCTGACGC AACTACTACA CCAAAATCTT ATGTATCTAC ATTTAAGAAA
GATACATTAT CTGACGTTTC AGAAATAAGA GCGACTGAAT GTTTTGTTGA GTATAAAGAA
GGAGTATCAG GAGCAGCACC AATTATTACT GTTGATGACG ATAAGTGTTA A
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| Protein sequence | MKRQGGFTLI ELVVVIVILG ILAVTAAPKF LNLQGDARKS SLQGLKGAMS GASGIVYGKS
AINGVEGAIS GSVDSIDVAF GYPTATSAGI ATAVVGLSDD WTSFPDATTT PKSYVSTFKK
DTLSDVSEIR ATECFVEYKE GVSGAAPIIT VDDDKC
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