Gene VSAL_I0475 details

Gene Information

• Locus tag: VSAL_I0475
• Symbol: mshB
• ID: 6988843
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 532170
• End bp: 532739
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643378856
• Product: type IV pilus, prepilin-like protein (MSHB)
• Protein accession: YP_002261999
• Protein GI: 209694071
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTATGA AGCGTCAAAA AGGTTTCTCA CTGGTTGAGC TAGTGATCGT TATTGTTGTT 
ATCGGTTTGC TGGCGACAGT GGCGTTACCA CGATTTTTAG ATGTCAGTCT CGAAGCGAAA 
AAAGCGAGTG TTGAAGGGGT TGCAGGTGGT TATGCAACTG CTGTACTCTC CGCAAGAGCG 
CAGTGGGAAG CAGAAGCGAG ACCTAAAATT GACGGTTATA ATGCAGTAAG TTATGACGGA 
ACTGAGTTCT GGCTAACGGA TCCTTCTCAA GCAAATCAGT CTGATTTTCG TCCGGGTTAC 
CCGATGGCAC CAAGAGAAGA TTTAGATGGG GCAACAACAG GCGGTTATCC TTCAGAATTA 
ACATCGAAAG AATGTATTTT ATTAATGGAA ATGTTATTAC AAAATGCCCC TTATGTAACC 
GATGATGCTA AGGATGAAAA AGCGAAATAT TTAGCGGAAA TTATTACTGA TAATAGCCGT 
AAGCAATGTA AATATACTCA ACAAGAGAAT GAAGGGCACT TCTTTACTTA TGAACCAGAG 
AGTGGCCGAG TTGTAGTTAC CTTACAATAA 

 

Protein sequence

MIMKRQKGFS LVELVIVIVV IGLLATVALP RFLDVSLEAK KASVEGVAGG YATAVLSARA 
QWEAEARPKI DGYNAVSYDG TEFWLTDPSQ ANQSDFRPGY PMAPREDLDG ATTGGYPSEL 
TSKECILLME MLLQNAPYVT DDAKDEKAKY LAEIITDNSR KQCKYTQQEN EGHFFTYEPE 
SGRVVVTLQ