| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0470 |
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| Symbol | mshM |
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| ID | 6988840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 526758 |
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| End bp | 527606 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378852 |
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| Product | type IV pilus, mannose-sensitive hemagglutinin D (MSHM) |
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| Protein accession | YP_002261995 |
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| Protein GI | 209694067 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00298128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATGAAT CCCATTTTGG GCTGAAGCAG CTTCCATTTA CGCTTACGCC AAACACATCG
CTTTTCCATG GATTGTTGCC TCATTATGAA GCAATTCAAA CCGTGTTATC TGCGATATCA
ATGGGAGAGG GAGTCATCAA AGTAACGGGC GAAATTGGCA CTGGAAAAAC ACTAGTCTGC
AGAATGCTAA TGAATCAGCT GCCGAGTAAT GTTGAGTTAC TTTATTTGCC TAATCCTGTG
ATGAATGGAC ATGAATTACG TCAAGCGTTA GCAAAAGAGT TAAGGATTGA ACAGCATGGA
GACGATATTG CTTTAACGGA TCGTATTCAT GAGAAAATTA TAGAGTTACA AGCACTAGGA
AAAACAGCCG TTGTTTTTCT TGATGAAGCT CAGGCATTAA GTGATGAAGC ATTAGAAACC
TTACGATTGT TTGGCAATTT AGAAACCGAC TATAAAAAAT TATTACAGAT AGTGTTGTTT
GGTCAGCCCG AATTAGATGA AAGATTACAG CAATACCATT TAAGACAACT TCGTCAACGA
ATTACGTTTT CAGCCACATT AAGACCATTA ACTATGAGTG AAACGGTGGC TTATATTCGT
TTCCGAATGA CTGAATCTGG GTGTGAAGTG AATCCTTTTT CATTGACTCA AATGAAAGCT
ATTTGGCGAG CGACAACAGG GGTTCCGCGG TTGATTAATC AGGTATGCCA TAAATCATTG
TTAATTTCGT TTTCTGAGCA GTTAATTATC GTATCTTCTC GTTCTGTTTT TAGTGCCATT
AAAGATACAA CAGACACAAT GAAACCTACC TATTATTTCC CTAAGTTTTG GGGTTGGAGA
AAAGCGTGA
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| Protein sequence | MYESHFGLKQ LPFTLTPNTS LFHGLLPHYE AIQTVLSAIS MGEGVIKVTG EIGTGKTLVC
RMLMNQLPSN VELLYLPNPV MNGHELRQAL AKELRIEQHG DDIALTDRIH EKIIELQALG
KTAVVFLDEA QALSDEALET LRLFGNLETD YKKLLQIVLF GQPELDERLQ QYHLRQLRQR
ITFSATLRPL TMSETVAYIR FRMTESGCEV NPFSLTQMKA IWRATTGVPR LINQVCHKSL
LISFSEQLII VSSRSVFSAI KDTTDTMKPT YYFPKFWGWR KA
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