Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0469 |
Symbol | mshD |
ID | 6988847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 525107 |
End bp | 526747 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378851 |
Product | type IV pilus, mannose-sensitive hemagglutinin D (MSHD) |
Protein accession | YP_002261994 |
Protein GI | 209694066 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00341212 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCAT GTAAAATCAT CGTTGGGTTA ATGGTCGCTT CTTTAGCAGG TTGTTCAATG GGCCATCGAG ATCCAACGGA GATCAAACAA ACCTTAGATC AATCTATTAA TGATAATGGC GGTCAATTAT TGGATGATCT ACCTGCTTCA ATACAAGCCG ATTTAATGCC TGATTTAAAC TCATCAACGG TGTCAATTGA TGAGCCCGTA AAACGATTTA GAATCAAAGC GAATGGCGTG AGTGCAAAAG CCTTTTTTAC AAGCTTAGTA AAAGGCACAG AATACAGTGT GATATTGCAT CCTGATGTCA GCGGTCGAAT TACGATGAAC GTAAATGAAG TGACGTTGGA TGAAGTACTT CGCTCTGTTG AAGATCTTTA TGGTTATGAA ATCATAAAAT CAGGCAAGGT ATTGCAAGTT TATCCTGCGA CGATCCGCAC CGAAACGATC CCCGTTGATT ATTTACAATT AACACGTAAG GGTCGTTCTT TAACGACAAT CACTACAGGG TCGATTACAA ATTCAGACAG TAACTCATCG AATAGTAATG ATAGTTCTAA TTCGAATAAC TCATCGTCTT CGTCATCTTC CTCCTCTGCT ACTGGTGGCA CTGAGATAGA AACAACGAGT GAAAGTGATT TTTGGAAAGA ACTAGAAAAA GCCGTTTCAG TCATGATAGG TAATGGTTCT GGGCGAAGTG TCGTTGTATC ACCTCAAGCA AGTGTGATCA CTATTACGGC CTCTCCTGAT GAATTGCGTA AAGTGAAACA GTTCTTAGGT ATTTCACATA AGCGCTTACA GCGTCAAGTA ATCCTAGAAG CTAAATTATT AGAAGTGACA CTCAGTGATG GTTACCAACA AGGTATTAAT TGGTCTAACT TAACGGCTGC GGTTGGAGGC ACTGATATTG TTTTTGGACA AGTCCCAGGA ACAACCGCCG GAGTTCTGCC TGGTATGGAT GCTATTGGAT CATTATTGGG CGGACAAACC AATATTACGG TTTCTGATGG TAATTTTTCA GCTGTATTAA GTTTTATGGA TACTCAAGGG GATTTGAATG TGCTTTCAAG CCCGAGAGTG ACGGCTGCCA ACAACCAGAA AGCCGTGATC AAAGTGGGTC GTGATGAATA CTTCGTCACT GAAGTCTCTA GTGTAACTGG CAATGGTGAT AATTCGAATG CATCACCAGA AGTGACATTA ACGCCATTTT TCTCTGGTAT TTCATTGGAT GTTACGCCCC AAATTGATGA TAAAGGGAAT GTGATGCTCC ACGTTCACCC ATCCGTTATC GATGTTGAAA CAGAAACAAA GATCATCGAT TTAGGTGATG TTGGAGGGGT TCTTGAGCTA CCGCTGGCCA AAAGCTCTAT CCGTGAATCT GATTCTGTTA TCCGAGCAAA AAGCGGAGAT GTCGTTGTTA TTGGTGGATT GATGAAATCA CAAACGGTTG ATCAAGTATC AAAAGTTCCG TTCCTTGGTG ATATTCCTGT TCTTGGGCAT TTATTCCGAA ATGTCAGTCA ATTAACGACT AAAACAGAGT TAGTTATCTT GCTTAAGCCA ACGGTTGTTG GGGTTGATAC ATGGCAAGAA GAGTTAGAAC GCTCACGTGA TCTTTTGCAA GAATGGTTTC CTGACGAGTA A
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Protein sequence | MKACKIIVGL MVASLAGCSM GHRDPTEIKQ TLDQSINDNG GQLLDDLPAS IQADLMPDLN SSTVSIDEPV KRFRIKANGV SAKAFFTSLV KGTEYSVILH PDVSGRITMN VNEVTLDEVL RSVEDLYGYE IIKSGKVLQV YPATIRTETI PVDYLQLTRK GRSLTTITTG SITNSDSNSS NSNDSSNSNN SSSSSSSSSA TGGTEIETTS ESDFWKELEK AVSVMIGNGS GRSVVVSPQA SVITITASPD ELRKVKQFLG ISHKRLQRQV ILEAKLLEVT LSDGYQQGIN WSNLTAAVGG TDIVFGQVPG TTAGVLPGMD AIGSLLGGQT NITVSDGNFS AVLSFMDTQG DLNVLSSPRV TAANNQKAVI KVGRDEYFVT EVSSVTGNGD NSNASPEVTL TPFFSGISLD VTPQIDDKGN VMLHVHPSVI DVETETKIID LGDVGGVLEL PLAKSSIRES DSVIRAKSGD VVVIGGLMKS QTVDQVSKVP FLGDIPVLGH LFRNVSQLTT KTELVILLKP TVVGVDTWQE ELERSRDLLQ EWFPDE
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