| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0383 |
|---|
| Symbol | alr |
|---|
| ID | 6988412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 422726 |
|---|
| End bp | 423802 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643378760 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_002261913 |
|---|
| Protein GI | 209693985 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0172619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCG CTGCTGCACA GATTGATATG TCTGCCTTAG CGCATAATTT GCAAAAAATT
AAACAGCAAG CACCAAACAG CAAACTCCTT GCTGTGGTAA AAGCAAATGG TTATGGCCAT
GGTTTACTCA ATATTGCTAA AGGTGCGCAC GGTGTAGATG CTTTTGGTGT GGCGCGAATT
GAAGAGGCTT TACAGCTTCG AGCTGGTGGC ATAGTGAAAC AAGTTTTATT ACTCGAAGGA
TTTTATTCTG CGGGTGATTT ACCAATTTTA GTCGCTAATA ACATTCAAAC GGCAGTGCAT
TGCAAAGAGC AACTTGAAGC ATTAGAAAAT GCAGATCTTG AAGGCCCTGT TGTTGTTTGG
TTGAAAGTCG ATTCAGGTAT GCATCGCTTA GGTATTCGCC CTGAAGAATA CCAAGAATAT
GTTGATCGTT TGCATGCGTG TAAAAATGTA GCTCAGCCAC TGCGTTATAT GAGCCATTTT
GGTTGTGCAG ATGAATTAGA TAATCCGACG ACGAACGAAC AAATTGAAAC GTTCATGTCA
TTGACGGATG GATGCCAAGG GGAACGGTCG CTTGCGGCTT CTGCTGGATT GCTTGCATGG
CCAGACAGTC AATTGGATTG GGTTCGTCCC GGTATCATTA TGTATGGTGT CTCTCCTTTT
TCTGAGAAAA CGGCTCAAGA TTTAGGGTAT TTACCTACCA TGACTCTCAC TTCTCATTTG
ATCGCGGTAA GAGAAGTAAA AGCCGGAGAA AGTGTTGGTT ATGGTGCGAT GTGGACCAGT
GAGCGTGATA CTAAAATTGG GGTTATCGCG ATCGGTTACG GCGATGGTTA CCCAATTGCA
GCACCGAATG GAACGCCAGT ATTAGTTAAT GGACGCAAAG TTCCGGTAGC TGGTCGTGTT
TCGATGGATA TGCTAACGGT TGATTTAGGA CCTGATGCAG AAGATAACGT TGGTGATGAA
GCTATTTTGT GGGGACGAGA TCTTCCTGCA GAAGAAGTAG CAGAACACAT TGGAACTATT
GCTTATGAGT TAGTGACTAA ACTAACATCA AGAGTACAAA TGCAATATAT TCCTTAA
|
|---|
| Protein sequence | MTAAAAQIDM SALAHNLQKI KQQAPNSKLL AVVKANGYGH GLLNIAKGAH GVDAFGVARI
EEALQLRAGG IVKQVLLLEG FYSAGDLPIL VANNIQTAVH CKEQLEALEN ADLEGPVVVW
LKVDSGMHRL GIRPEEYQEY VDRLHACKNV AQPLRYMSHF GCADELDNPT TNEQIETFMS
LTDGCQGERS LAASAGLLAW PDSQLDWVRP GIIMYGVSPF SEKTAQDLGY LPTMTLTSHL
IAVREVKAGE SVGYGAMWTS ERDTKIGVIA IGYGDGYPIA APNGTPVLVN GRKVPVAGRV
SMDMLTVDLG PDAEDNVGDE AILWGRDLPA EEVAEHIGTI AYELVTKLTS RVQMQYIP
|
|---|
| |