Gene VSAL_I0337 details

Gene Information

• Locus tag: VSAL_I0337
• Symbol: rpsE
• ID: 6989161
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 371593
• End bp: 372093
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 643378714
• Product: 30S ribosomal protein S5
• Protein accession: YP_002261869
• Protein GI: 209693941
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00106169
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAG AACAACAACA AGCTACAGAT TTGAATGAAA AGCTAATTGC TGTTAACCGT 
GTTTCTAAAA CGGTTAAAGG CGGTCGAATC TTTAGTTTTA CTGCACTAAC AGTTGTTGGT 
GACGGTAATG GTCGCATTGG TTTCGGTTAC GGCAAAGCCC GTGAAGTACC AGCTGCGATT 
CAAAAATCAA TGGAAAAAGC ACGTCGTAAC ATGTTTACGA TCGCTCTTAA CGAAGGTACT 
CTTCACCACG CTGTTAAAGG TCGCCACACT GGTTCTAAAG TGTACATGCA ACCAGCTTCA 
GAAGGTACTG GTATCATCGC TGGCGGTGCT ATGCGTGCAG TACTAGAAGT TGTGGGTGTC 
CGCAACGTAC TAGCTAAAGC TTACGGCTCT ACTAACCCAA TTAACGTTGT TCGTGCAACG 
ATTCTTGGTC TAACTAGTGT TAAGTCACCT GAGATGGTAG CTGCTAAGCG TGGTCTAACT 
GTTGAAGCTA TTTCGGAGTA A 

 

Protein sequence

MAKEQQQATD LNEKLIAVNR VSKTVKGGRI FSFTALTVVG DGNGRIGFGY GKAREVPAAI 
QKSMEKARRN MFTIALNEGT LHHAVKGRHT GSKVYMQPAS EGTGIIAGGA MRAVLEVVGV 
RNVLAKAYGS TNPINVVRAT ILGLTSVKSP EMVAAKRGLT VEAISE