| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0252 |
|---|
| Symbol | |
|---|
| ID | 6986393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 297831 |
|---|
| End bp | 298976 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643378634 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_002261789 |
|---|
| Protein GI | 209693861 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA CACCACTAGT TGAGTTTGTG CGAGATATTT ATCAAACTAA TGACTTTATT
CCACTGCATG CCCCAACGTT TGATGGCAAT GAGCAGAAGT ATGTTCTAGA AACCATTCAA
AGTACTTTCG TATCTAGCGT TGGTAAATTT GTAGATGAAT TTGAACAGAA AATAGAATCC
TATACAGGAA CAGCAAAAGC GGTTGCGACG GTTAATGGAA CAGCTGCGCT TCATGCTGCC
TTGTATATGG CAGGCGTTCA GCATGGTGAT TTTGTTATTA CTCAAGCGCT TACTTTTGTT
GCAACCTGTA ATGCATTGCA TCACATGGGT GCAGAACCAA TCTTTGTCGA TGTATCACCT
GTAAGCTTAG GGCTTTGTCC TAAAGCGATG GATGAGTATT TAACTCAACA TGCACAAGTT
ACGGAAACGG GGTGTATTCA TTCACAAACT AAACGTCCAA TTCGTGCGGT TGTACCAATG
CATACCTTTG GACACCCTGT CGAATTAGAT GAATTGATTG CCGTTTGCCA TAAATGGAAT
ATTACCTTAG TTGAAGATGC AGCTGAAAGC TTAGGCTCTT TTTACAAAGG TAAACATACG
GGTACGTTAG GCGATTTTGG TGCGGTTAGT TTTAATGGTA ATAAGATCAT TACAACTGGT
GGCGGCGGTA TGGTGCTATG CAAAACGGCA GAGCTTGGAG CTCGAACAAA ACACGTTACT
ACGACAGCAA AAGTACCACA TCCTTATGAG TTCTATCATG ATGAAGCCGG TTTTAACTAT
CGAATGCCGA ACCTTAATGC AGCGTTAGGT TGTGCTCAGA TGGAAGTATT AGAACCATAC
TTAGCTCAGA AGCGAGTATT GGCAAATCGT TATCAAGATT TTTTTGCTGA AAGTGATTTC
CAATTTGTGT CTGAGCCTGA ATATGCACAG TCAAATTATT GGTTAAATGC AGTGATTTGT
CCGTCAGTAG ACGCGCGTAA TGATATTTTA AAACAAACCA ATGAATCAGG TGTAATGACT
CGCCCAATCT GGCAATTGAT GCACCGTTTG CCAATGTTTA AAGAGGCACC TCGTGGTGAT
TTAACTCAGT CTGAATATAT TGAAGCACAC TTGATTAATT TACCTAGCAC GCCTGTTGCA
CTGTAG
|
|---|
| Protein sequence | MNKTPLVEFV RDIYQTNDFI PLHAPTFDGN EQKYVLETIQ STFVSSVGKF VDEFEQKIES
YTGTAKAVAT VNGTAALHAA LYMAGVQHGD FVITQALTFV ATCNALHHMG AEPIFVDVSP
VSLGLCPKAM DEYLTQHAQV TETGCIHSQT KRPIRAVVPM HTFGHPVELD ELIAVCHKWN
ITLVEDAAES LGSFYKGKHT GTLGDFGAVS FNGNKIITTG GGGMVLCKTA ELGARTKHVT
TTAKVPHPYE FYHDEAGFNY RMPNLNAALG CAQMEVLEPY LAQKRVLANR YQDFFAESDF
QFVSEPEYAQ SNYWLNAVIC PSVDARNDIL KQTNESGVMT RPIWQLMHRL PMFKEAPRGD
LTQSEYIEAH LINLPSTPVA L
|
|---|
| |