Gene VSAL_I0246 details

Gene Information

• Locus tag: VSAL_I0246
• Symbol: rmlC
• ID: 6989125
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 292059
• End bp: 292616
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643378629
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_002261784
• Protein GI: 209693856
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGTTA TAGATACCAA TATTCCTGAT GTAAAAATAT TCGAGCCAAC GGTGTTTGGG 
GATGAACGTG GGTTTTTCAT GGAAACATGG AGCCAGAAGA AGTTTGAAGA ATTAGTGACG 
GGAAAACCAA CTCAGTTTGT ACAAGATAAC CATTCAAAAT CTAAAAAAGG GATTTTGCGT 
GGCTTGCATT ACCAAACAGA AAACACCCAA GGGAAACTAG TACGTGTAGT TTCAGGAGAG 
GTGTTTGATG TAGTGGTTGA TATTCGTGAA AATTCCCCAA CCTTTGGTCA ATGGGTTGGC 
ACTTATCTTT CTGCTGAAAA CAAACATCAA CTCTGGGTGC CAGAAGGCTT TGCTCATGGT 
TTTTATGTGA CAAGTGAAGA CGCTGAGTTT GTCTATAAAT GCACGGATTA TTATAACCCA 
AAATCAGAAA TCTCAATTGC TTGGGATGAT AAGGCTATTG GTATTGAATG GCCAATCACG 
ACTCCACCTC AATTATCTGA GAAAGATAAA AATGCGATGA TATTATCTCA AGTCACACCC 
ATAAAGCAGG AGGACTAG 

 

Protein sequence

MNVIDTNIPD VKIFEPTVFG DERGFFMETW SQKKFEELVT GKPTQFVQDN HSKSKKGILR 
GLHYQTENTQ GKLVRVVSGE VFDVVVDIRE NSPTFGQWVG TYLSAENKHQ LWVPEGFAHG 
FYVTSEDAEF VYKCTDYYNP KSEISIAWDD KAIGIEWPIT TPPQLSEKDK NAMILSQVTP 
IKQED