Gene VSAL_I0224 details

Gene Information

• Locus tag: VSAL_I0224
• Symbol: recQ
• ID: 6989064
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 268514
• End bp: 270349
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643378606
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_002261764
• Protein GI: 209693836
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCAGCA TTACAGTCGA GCAGCCAATG GAACAGGTAT CACAGAGCCA AACTGTTTTA 
AGAGATGTTT TTGGTTATCA GGAATTTCGT GTTGGACAGG AAGAAGTCAT TAATGCCGTT 
CTTGAAGGTA AAGACAGCTT AGTTATTATG CCGACGGGTG GCGGTAAATC ACTGTGTTAT 
CAAATTCCGG CTTTAGTGTT TGAAGGATTA ACTTTAGTCA TCTCGCCATT GATTTCTTTA 
ATGAAAGATC AAGTGGATCA ATTAAAGGCG GATGGGGTGC AAGCGGAGTG TTTAAATTCG 
ACTATTGATC GTGACGCTCA AGTCTCTATT TGGAACCGAG TTAATTCGGG TCAAATTAAG 
ATGCTGTATG TGTCACCTGA GCGTGTGATG ATGCGAGATT TTATGGATCG ATTAGCATCC 
CTAAATCTAT GTATGATCGC CGTGGATGAA GCGCATTGTA TTTCTCAATG GGGCCATGAT 
TTCCGCCCTG AATACGCATC TCTTGGTCAA ATCAAACAGC GTTTTCCTAA TGTTCCGATT 
ATGGCGCTAA CGGCAACGGC TGATGAAGCA ACACGTAAAG ATATATTAAG TCGTCTTTCT 
TTACCAAATC CCCATGAATA TTTGGGCAGT TTTGATCGCC CTAATATTCG CTATACCGTG 
TTAGAAAAAC ACAAACCAGT CAGTCAAATT GTTCGATATC TTGCAACGCA GAAAAATCAA 
TGTGGTGTGA TTTATTGTGG TAGCCGTAAG AAAGTCGAAA TGCTGACAGA AAAACTCTGC 
AATAACCACA TTCGAGCGGC GTCTTATCAT GCGGGTTTGG ATCTTGATGA GCGAAATTAT 
GTGCAAGAAG CATTTCAGCG AGACGATATT CAAATAGTGG TTGCAACGGT TGCTTTTGGC 
ATGGGGATTA ATAAATCCAA CGTGCGTTTT GTTGCTCATT TTGATATCCC AAAGAACATT 
GAATCGTATT ATCAAGAAAC CGGTCGAGCA GGGCGTGATG GTTTACCTGC AGAAGCGGTG 
ATGCTTTACG ATCCTGCGGA TATTGTTTGG TTAAGAAAAT TAGTGGAAGA AAAGCCAGAA 
GGTCCACAAA AATTAGTTGA AAGCCATAAG TTGAATGCGA TGACGGCTTT TGCTGAAGCG 
CAGACATGTC GTCGCCAAGT CCTATTAAAT TATTTTGGCG AATACAATCC AAAACCTTGT 
GGTAACTGTG ATGTTTGTTT AGATCCCCCA AAACAATTTG ATGGCACTGA AGCCGCACAA 
AAAGCGCTCT CTTGTGTTTA TCGCGTAAAC CAAAGCTTTG GTGTTGGTTA CGTGGTGGAA 
GTTCTACGTG GTTTAAAGAT TGCTCGTATT CGTGAGCATG GCCATGACAA GTTATCTACT 
TACGGTATTG GTAAAGATAA TAGCCACGAG TATTGGGTGA GCATTATTCG TCAATTGATC 
CACAAAGGGC TATTAACGCA AAATATTACC CGAAACTCGA CATTACAGTT AACCGAAGAG 
GCACGTCCGA TCTTAAAAGG TCAGGAGCCC CTAGAATTAG CGGTTCCACG TTTAGATACG 
GCGGCTAAAA CGGCGAAATC TGAAAAATTG AATAATCGTC AATACGATAA GCAATTGTTT 
GCCAAATTAC GTAAGTTACG TAAATCCATT GCTGATCGTG ATGATCTCCC GCCTTATGTC 
GTTTTTAGTG ATGCAACGTT AATGGATATG GCTGACATTA CTCCGACGTC TTATGGTGAG 
ATGCTTGCTG TTAATGGCGT AGGGCAGAAG AAACTAGAAA AATACGCCGA TCCTTTTTTA 
GATTTGATCG AGATGCACAT TACAGGACAA GGATAA 

 

Protein sequence

MSSITVEQPM EQVSQSQTVL RDVFGYQEFR VGQEEVINAV LEGKDSLVIM PTGGGKSLCY 
QIPALVFEGL TLVISPLISL MKDQVDQLKA DGVQAECLNS TIDRDAQVSI WNRVNSGQIK 
MLYVSPERVM MRDFMDRLAS LNLCMIAVDE AHCISQWGHD FRPEYASLGQ IKQRFPNVPI 
MALTATADEA TRKDILSRLS LPNPHEYLGS FDRPNIRYTV LEKHKPVSQI VRYLATQKNQ 
CGVIYCGSRK KVEMLTEKLC NNHIRAASYH AGLDLDERNY VQEAFQRDDI QIVVATVAFG 
MGINKSNVRF VAHFDIPKNI ESYYQETGRA GRDGLPAEAV MLYDPADIVW LRKLVEEKPE 
GPQKLVESHK LNAMTAFAEA QTCRRQVLLN YFGEYNPKPC GNCDVCLDPP KQFDGTEAAQ 
KALSCVYRVN QSFGVGYVVE VLRGLKIARI REHGHDKLST YGIGKDNSHE YWVSIIRQLI 
HKGLLTQNIT RNSTLQLTEE ARPILKGQEP LELAVPRLDT AAKTAKSEKL NNRQYDKQLF 
AKLRKLRKSI ADRDDLPPYV VFSDATLMDM ADITPTSYGE MLAVNGVGQK KLEKYADPFL 
DLIEMHITGQ G