Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0219 |
Symbol | hemD |
ID | 6988650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 259699 |
End bp | 260445 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643378601 |
Product | uroporphyrinogen III synthase HemD |
Protein accession | YP_002261759 |
Protein GI | 209693831 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATAT TGGTGACTCG CCCAGAGCAA GAGAGCCAAG CACTCTGTGA TGCCCTACAC CAAGCAGGGC ACCTCGCCAT TTCTCATCCT TTGTTAACCA TACATCCAGG ACGAGAACTT TCTCAACTGC CTTCTCTTTT TTCTTCTCTG TCTGATGGTG ATTTTATCAT CGCCGTAAGC CAACATGCTG TTGAACATGC GCAGAACAGC CTTCAAATGC AGCAAACGGA ATGGAAAAAA GGGGTAAATT ATATTGCGGT TGGTCAAAAG AGCGCTCAAC ACCTCAAAAA GTATGTTGTA GATACAGTAC ACTTTCCAAC ACACAGCGAT AGCGAACATT TATTGGCTCT TCCTGTTTTA AAAAACACAA AAGGAAAGAA AGCCCTCATT TTACGAGGCA ATGGCGGACG AGACTTAATA TTTCAAGCGC TTGACAATTC GGGGGTAGAA GTCTCTTATT GTGAAACATA TCAACGAAAA AACACACCAT TTAATGGCGC ATTAAAAGCA GCAGAATGGC AAAAAGAGCA CGTAGATACA ATCATAGTGA CCAGCGGAGA ACAACTGTCC TTCTTCACTG AACAATTCAC ACTCATACAT TTACACTGGG TACTGCACTG TCGTTTATTA GTACCGAGTG AACGAATTAA CCAACTTGCT CAACAACTTG GTTATCAACA TATAGAAACG GTTGGCGGAG CCTCTAATTC CGATGTGCTG CACTATCTCA GTGAGCATCA TGCATGA
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Protein sequence | MTILVTRPEQ ESQALCDALH QAGHLAISHP LLTIHPGREL SQLPSLFSSL SDGDFIIAVS QHAVEHAQNS LQMQQTEWKK GVNYIAVGQK SAQHLKKYVV DTVHFPTHSD SEHLLALPVL KNTKGKKALI LRGNGGRDLI FQALDNSGVE VSYCETYQRK NTPFNGALKA AEWQKEHVDT IIVTSGEQLS FFTEQFTLIH LHWVLHCRLL VPSERINQLA QQLGYQHIET VGGASNSDVL HYLSEHHA
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