Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0197 |
Symbol | |
ID | 6988624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 236541 |
End bp | 238877 |
Gene Length | 2337 bp |
Protein Length | 778 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643378582 |
Product | putative RNA binding protein |
Protein accession | YP_002261740 |
Protein GI | 209693812 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0364185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAATAA ATATAATTGC CAAAGAACTT AACGTTCGCC CTCAACAAGT TGCCGCTGCT GTTCAATTGA TTGACGAAGG CAGCACGATT CCATTTATTG CTCGTTACCG TAAAGAAGTA ACTGAAGGTT TGGACGATAC TCAACTTCGT ACGCTAGACA CGCGTTTAAC TTACTTACGA GAGTTGGATG ATCGTCGTAA ATCAATTCTA AAATCAATCA AAGAACAAGA AAAACTGACG CCTGAACTAG AGCGTGAAAT TTTAGATGCC GACAGCAAAA CTCGTCTTGA AGATTTGTAC TTACCCTTCA AACGTAAGCG TCGAACTAAA GGTCAAATTG CAATTGAAGC AGGAATTGAA CCGCTGGCTG ATTTGTTGTG GACACGTCCT GAAAATACCC CTGAAGAGGC GGCTCAATCG TATATTAATG CCGATAATGG CTTTGCTGAT ACCAAAGCGG TATTAGACGG CGCTCGTGCA ATCTTGATGG AACGTATGGC TGAAGATGCC AACTTACTAG AGAAAGTACG TAACTACTTA ACCAGTAACG CTGAACTGTC CTCTAAAATG GTTGATGGCC AAGAGCACAC AGGCGAGAAG TTTAAAGATT ACTTTGAACA TAATGAAAAG TTAACGCGTG TTCCTTCTCA CCGTGCGCTT GCGATGCTTC GTGGTCGTAA TGAAGGTTTT TTACAGCTTT CTATTAATGC CGATCCAAAT CAAGAAGAAG GCGTTCGTGG CTCTTACTGT GAAATCATCA TCGCCAATCA TTATGGCGTT ACTTTAGGAT CTCAACCTGC GGATTTATGG CGTAAACAAG TGATTAGCTG GACATGGCGC ATCAAGATTT TAATGCACAT GGAAACCGAG TTAATGGGCG CATTAAAAGA GCGCTCTGAA GATGAAGCGA TTGATGTATT TGCCACTAAC CTTAAAGACT TATTAATGGC GGCACCTGCG GGTCTGAAAA CGACACTAGG TTTAGATCCT GGTTTACGTA CCGGCACTAA AGTCGCAGTG GTTGATGCAA CGGGTAAAGT GTTAGCAACA GATACCATTT ATCAAAACCA ACCTCACAAT AAAACAGCGC AATCTGCACA GATTATCGAA ACCTTAATCA AACGTCACAA TGTCGATTTG ATTGCGATTG GTAATGGTAC GGCTTCACGC GAGACCGATG CCTTTGTGGG TGATTTACTG AAAAAATCAG GCTTGTCTGC AACCAAAATT ATCGTGAGTG AAGCCGGTGC ATCTGTGTAC TCGGCCTCTG AACTCGCAGC AAAAGAATTC CCCGATTTAG ATGTGTCTAT TCGTGGTGCA GTATCTATCG CTCGTCGCTT GCAAGATCCA CTGGCAGAGC TGGTTAAAAT TGACCCGAAA GCGATTGGTG TTGGTCAATA TCAACATGAC GTTAGCCAAA GCCAATTAGC GAAGAAGCTA GATGCAGTTA TTGAAGACTG TGTAAATGCC GTCGGTGTTG ATGTAAATAC CGCATCGTCT GCATTATTGA CCCGTGTTGC TGGTTTATCG ACGACGATCG CACAAAATAT TGTTGATTAC CGTGATGAAA ATGGTCGCTT TGAAAACCGT ATTACATTGA AAAAAGTCGC ACGTTTAGGG CCAAAAGCGT TTGAACAGTG TGCTGGTTTC TTACGTGTGA TGAATGGTAA AAACCCATTA GATGCCTCAG CGGTTCACCC TGAAGCGTAT CCTGTAGTGA AAACCATTGC GGAGAAAAAC GGCAAAGCCA TTGATGCGAT TATTGGTAAT ACTGAATTTT TACGTTCTGT CTCTGCGAAT GATTACATCA GTGCTGATTT TGGTCTACCT ACCGTCACTG ACATCATTTC TGAGCTTGAT AAACCGGGTC GAGATCCTCG TCCTGAGTTT AAAACGGCGA CCTTTGCTGA TGGCGTAAAC ACGGTATCCG ATCTTGAATT AGGCATGATA TTGGAAGGCG TGGTATCTAA CGTGGCGAAC TTTGGTGCGT TTGTGGATAT CGGTGTTCAC CAAGATGGTT TGGTTCATAT CTCGGCACTA AGCGATACGT TTGTCTCTGA CCCACGTGAA GTGGTTAAAG CCGGTGATAT CGTGAAAGTG AAAGTCATGG AAGTGGACGC GCAACGTAAG CGTATCGCCC TGACTATGCG CTTGAATGAT CAGCCAGGGG AAGATACTCG TCCTCAGCGC CAATCAAATC AACCACAGCA GCGTAATGAG CGTACTCAAG CGCCAAGACC TTCCTCTTCT GCAAGACAGC AACGTTCGAA TAATGATGTT GGTAATGCGG CGATGGGTGG TGCGTTTGCT GCGGCGTTTG CGAAGGCTAA GAAGTAA
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Protein sequence | MIINIIAKEL NVRPQQVAAA VQLIDEGSTI PFIARYRKEV TEGLDDTQLR TLDTRLTYLR ELDDRRKSIL KSIKEQEKLT PELEREILDA DSKTRLEDLY LPFKRKRRTK GQIAIEAGIE PLADLLWTRP ENTPEEAAQS YINADNGFAD TKAVLDGARA ILMERMAEDA NLLEKVRNYL TSNAELSSKM VDGQEHTGEK FKDYFEHNEK LTRVPSHRAL AMLRGRNEGF LQLSINADPN QEEGVRGSYC EIIIANHYGV TLGSQPADLW RKQVISWTWR IKILMHMETE LMGALKERSE DEAIDVFATN LKDLLMAAPA GLKTTLGLDP GLRTGTKVAV VDATGKVLAT DTIYQNQPHN KTAQSAQIIE TLIKRHNVDL IAIGNGTASR ETDAFVGDLL KKSGLSATKI IVSEAGASVY SASELAAKEF PDLDVSIRGA VSIARRLQDP LAELVKIDPK AIGVGQYQHD VSQSQLAKKL DAVIEDCVNA VGVDVNTASS ALLTRVAGLS TTIAQNIVDY RDENGRFENR ITLKKVARLG PKAFEQCAGF LRVMNGKNPL DASAVHPEAY PVVKTIAEKN GKAIDAIIGN TEFLRSVSAN DYISADFGLP TVTDIISELD KPGRDPRPEF KTATFADGVN TVSDLELGMI LEGVVSNVAN FGAFVDIGVH QDGLVHISAL SDTFVSDPRE VVKAGDIVKV KVMEVDAQRK RIALTMRLND QPGEDTRPQR QSNQPQQRNE RTQAPRPSSS ARQQRSNNDV GNAAMGGAFA AAFAKAKK
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