Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0177 |
Symbol | rmlC |
ID | 6989413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 217730 |
End bp | 218287 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643378563 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_002261721 |
Protein GI | 209693793 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTTA TAGATACCAA TATTCCTGAT GTAAAAATAT TCGAGCCAAC GGTGTTTGGG GATGAACGTG GGTTTTTCAT GGAAACATGG AGCCAGAAGA AGTTTGAAGA ATTAGTGACG GGAAAACCAA CTCAGTTTGT ACAAGATAAC CATTCAAAAT CTAAAAAAGG GATTTTGCGT GGCTTGCATT ACCAAACAGA AAACACCCAA GGGAAACTAG TACGTGTAGT TTCAGGAGAG GTGTTTGATG TAGTGGTTGA TATTCGTGAA AATTCCCCAA CCTTTGGTCA ATGGGTTGGC ACTTATCTTT CTGCTGAAAA CAAACATCAA CTCTGGGTGC CAGAAGGCTT TGCTCATGGT TTTTATGTGA CAAGTGAAGA CGCTGAGTTT GTCTATAAAT GCACGGATTA TTATAACCCA AAATCAGAAA TCTCAATTGC TTGGGATGAT AAGGCTATTG GTATTGAATG GCCAATCACG ACTCCACCTC AATTATCTGA GAAAGATAAA AATGCGATGA TATTATCTCA AGTCACACCC ATAAAGCAGG AGGACTAG
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Protein sequence | MNVIDTNIPD VKIFEPTVFG DERGFFMETW SQKKFEELVT GKPTQFVQDN HSKSKKGILR GLHYQTENTQ GKLVRVVSGE VFDVVVDIRE NSPTFGQWVG TYLSAENKHQ LWVPEGFAHG FYVTSEDAEF VYKCTDYYNP KSEISIAWDD KAIGIEWPIT TPPQLSEKDK NAMILSQVTP IKQED
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