| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0174 |
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| Symbol | rffA |
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| ID | 6986363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 214965 |
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| End bp | 216107 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 643378561 |
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| Product | TDP-4-oxo-6-deoxy-D-glucose transaminase |
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| Protein accession | YP_002261719 |
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| Protein GI | 209693791 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | [TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTCCAT TTAATAAACC ACCAGTAACA GATAATGAGA TTTCATATAT TGATCAAGCA
ATTAAAAGTG GTTGTCTTGC CGGAGATGGA CATTTTTCAA AAAAATGTGA AACCTGGTTT
GAAAATGCTA CTGGAGCACA AAAAACCTTG TTAACACCTT CATGTACTCA CGCATTAGAG
ATGGCAGCTC TTCTTATTGA CATTCAGCCT GGTGATGAAG TTATTATGCC AAGCTATACC
TTTGTTAGTA CTGCAAATGC TTTTGTCTTA AGAGGTGCTA AAATTATTTT CGTTGATGTT
CACCCTGAAA CTATGAACAT TAATGAGAAT TTAATTGAAG CTGCAATAAC AAAAAAAACA
AAGGCGATTG TTCCTGTTCA TTATGCTGGT GTTGCGTGTG AAATGGATCT TATTATGAGT
TTAGCTCATA AGTATTCATT ATTCGTAATA GAGGATGCTG CTCAAGGGGT AATGTCTACT
TATAAAGGAA AAGCGTTAGG CTCTATTGGC CATTTAGGGG CTTTTAGTTT TCATGAAACT
AAAAATTACA CCAGTGGCGG TGAGGGGGGA CTATTGCTTA TTAATGACTC TAGATTTATA
AAACGAGCAG AGATACTAAG AGAAAAAGGA ACAAATCGTA GTCAATTCTT TAGGGGGATG
GTAGATAAAT ACAGCTGGGT TGATGTTGGA AGCAGTTTCC TTCCTAGTGA AATTCAATCG
GCTTATTTAT GGGCTCAATT AGGTAGTGCT GATAAAATTA ATAAAAAAAG ATTATCTGAT
TGGTTGTTTT ACTTTAATAA ACTACTTCCA TTTCAGCATG AAGGTTTAAT CGATTTACCT
CATATACCGG AAGAAGTAAA ACACAATGCT CACATGTTCT ATATTAAAGT AGAAAATTTA
GAGGTTAGAA CTCAAGTTTT AAATAAACTT AAAGATCGAG GTATATTAGC TGTATTCCAC
TATATACCAT TACATAGTTC TATCGCTGGT CTTCAATTTG GTCGTTTTCA TGCTGAAGAT
AAATATACAA CCGAAGAAAG TGAACGATTG TTAAGATTGC CAATGTTTTA CAACTTGTTA
GAAAGTGAGA GAGAACTTGT GTGCAATGAG TTAATTAAGA TTCTAAAGGA AATTCAATCA
TGA
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| Protein sequence | MIPFNKPPVT DNEISYIDQA IKSGCLAGDG HFSKKCETWF ENATGAQKTL LTPSCTHALE
MAALLIDIQP GDEVIMPSYT FVSTANAFVL RGAKIIFVDV HPETMNINEN LIEAAITKKT
KAIVPVHYAG VACEMDLIMS LAHKYSLFVI EDAAQGVMST YKGKALGSIG HLGAFSFHET
KNYTSGGEGG LLLINDSRFI KRAEILREKG TNRSQFFRGM VDKYSWVDVG SSFLPSEIQS
AYLWAQLGSA DKINKKRLSD WLFYFNKLLP FQHEGLIDLP HIPEEVKHNA HMFYIKVENL
EVRTQVLNKL KDRGILAVFH YIPLHSSIAG LQFGRFHAED KYTTEESERL LRLPMFYNLL
ESERELVCNE LIKILKEIQS
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