| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0150 |
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| Symbol | ubiD |
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| ID | 6986348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 189820 |
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| End bp | 191661 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643378541 |
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| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
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| Protein accession | YP_002261699 |
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| Protein GI | 209693771 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000286157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATATA AGGATTTACG CGGTTTTCTC GATCATTTGG AAGCGATCGG GCAGTTAAAA
CGCATTTCAC ACCCGATTGA CCCTCATTAT GAAATGACAG AGATCAGTGA TCGTACTTTA
CGAGCGGGTG GCCCTGCATT GCTGTTTGAA AATCCGATTG GTTATGATAT TCCTGTATTG
ACCAATTTGT TTGGTACTGC GGAGCGTGTG GCAATTGGTA TGGGACGTAA AGACGTTCTT
GAGCTACGTG AAGTTGGTAA GCTATTAGCG TATTTAAAAG AGCCCGAGCC ACCAAAAGGG
TTTAAAGATG CGATGGATAA GCTGCCAGTA TTCAAACAAG TATTGAATAT GCCAACGAAG
AACATCCGTA AAGCTGCATG TCAGCAAATT GTTTGGAAAG GCGATGACGT TGATCTTGAT
AAAATTCCGG TAATGAGTTG TTGGGCTGGC GATGTTGCTC CCTTGCTTAC ATGGGGGTTA
ACCGTTACTC GTGGCCCACA TAAGAAGCGT CAAAACCTAG GCATTTATCG CCAACAAAAG
CTCAGTAAAA ATAAAGTTAT TATGCGTTGG CTTGCTCATC GTGGTGGTGC ATTAGATTTA
CGTGATTGGA TGGAAACGAA TCCGGGCGAA CCTTTCCCTG TTTCTGTTGC GTTTGGTGCT
GATCCAGCGA CAATTCTTGG TGCAGTAACT CCGGTTCCTG ATACGTTGTC TGAATACGCA
TTTGCCGGTC TGCTACGTGG CAGTAAAACG GAAGTGACGA AATCGATTAG TAATGATTTA
GAAGTACCGG CCAGCGCTGA AATCGTACTG GAAGGTTATA TTGATCCAAG CGAATTTGCC
GATGAAGGCC CTTATGGTGA CCATACTGGT TATTATAATG AAATTGAAAA GCATCATGTA
TTCACTGTTA CCCACATCAC TATGCGTAAA GACCCCATTT ATCACAGCAC CTATACTGGT
CGTCCGCCAG ATGAACCTGC TGTATTGGGT GTGGCGTTAA ACGAAGTCTT TGTGCCGATA
TTACAAAAGC AGTTTCCTGA GATTATTGAC TTCTATTTAC CCCCTGAAGG GTGTTCATAT
CGCATGGCGG TAGTAACAAT GAAGAAACAA TACCCAGGAC ATGCTAAACG CGTGATGATG
GGTGTGTGGT CTTTCTTACG TCAATTCATG TACACTAAAT TTGTTTTGGT GTGCGACGAA
GAAGTCAATG CTCGAGATTG GTCAGAAGTG ACTGCTGCAA TGTCTCAGCA TATGGATCCG
TTTCGAGACA GTTTGATGAT AGAGAATACC CCTATCGATT CTTTAGATTT TGCTTCACCA
GTCGTTGGTT TAGGTTCAAA AATGGGCTTA GATATCACTA AAAAATGGGA CGCAGAATTA
GCACTGTCAC CAAATATCGA ATCGTCATCA ATAGAGAGTG CACATATTGA AGGTAATTTA
GCCGAGTTAA CAAAGGCCTT CCCTGAAATC ATTGATATTT ATTTACAGAA TGACAATGCC
AGTATGGTGA TTGTATCTAT CAATAAACAG GCTGCGCATA ACGGTAAGAG AATCATGGAA
GGGGTTTGGT CTCAGTTTGA TGAGAACAAG TTTGTTATCG TGTGTGACGG TGATGTCGAT
GTGAGTAATT GGAATGACAT TATTTGGGCT GTGACGACAC GAATGGACCC TGCAAGGGAT
ACACTGTTCT TGAAAAATGA AGACAGTCAC TCAAAAGTTG GTTTAGACGC GACCAATAAA
TGGGAAGAAG AATGCCTCCG TGAATGGGGA ACACCAATCA AAAAAGATCC TGAAATAGTC
GCTAAAATTG ACGCTATTTG GGGTGAATTA GGTATCTTTT GA
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| Protein sequence | MQYKDLRGFL DHLEAIGQLK RISHPIDPHY EMTEISDRTL RAGGPALLFE NPIGYDIPVL
TNLFGTAERV AIGMGRKDVL ELREVGKLLA YLKEPEPPKG FKDAMDKLPV FKQVLNMPTK
NIRKAACQQI VWKGDDVDLD KIPVMSCWAG DVAPLLTWGL TVTRGPHKKR QNLGIYRQQK
LSKNKVIMRW LAHRGGALDL RDWMETNPGE PFPVSVAFGA DPATILGAVT PVPDTLSEYA
FAGLLRGSKT EVTKSISNDL EVPASAEIVL EGYIDPSEFA DEGPYGDHTG YYNEIEKHHV
FTVTHITMRK DPIYHSTYTG RPPDEPAVLG VALNEVFVPI LQKQFPEIID FYLPPEGCSY
RMAVVTMKKQ YPGHAKRVMM GVWSFLRQFM YTKFVLVCDE EVNARDWSEV TAAMSQHMDP
FRDSLMIENT PIDSLDFASP VVGLGSKMGL DITKKWDAEL ALSPNIESSS IESAHIEGNL
AELTKAFPEI IDIYLQNDNA SMVIVSINKQ AAHNGKRIME GVWSQFDENK FVIVCDGDVD
VSNWNDIIWA VTTRMDPARD TLFLKNEDSH SKVGLDATNK WEEECLREWG TPIKKDPEIV
AKIDAIWGEL GIF
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