Gene VSAL_I0148 details

Gene Information

• Locus tag: VSAL_I0148
• Symbol: rho
• ID: 6989339
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 187298
• End bp: 188557
• Gene Length: 1260 bp
• Protein Length: 419 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643378539
• Product: transcription termination factor Rho
• Protein accession: YP_002261697
• Protein GI: 209693769
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00136527
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTTA CTGAACTTAA AAACAGACCA GTGTCTGACC TTGTTGCTCT TGGCGAATCA 
TTAGGCCTAG AAAACCTAGC TCGTCTAAGA AAACAAGACA TCATCTTCTC CATCCTTAAG 
CAACATGCGA AAAGCGGTGA AGACATCTTT GGAGATGGTG TACTTGAGAT TCTTCAAGAT 
GGCTTTGGTT TCCTTCGTTC AGCAGATTGT TCTTACTTGG CTGGCCCGGA TGACATCTAT 
GTCTCTCCAA GCCAAATTCG TCGCTTTAAC TTGCGTACTG GTGATACGAT TGGCGGAAAG 
ATTCGTCCAC CAAAAGATGG CGAACGTTAT TTCGCTCTTC TTAAAGTAAA CGCTGTTAAT 
TATGATCGCC CAGATAATGC TCGTAACAAA ATCCTTTTTG AAAACCTTAC CCCTTTACAC 
GCAAACGATC GTTTACGTAT GGAACGTGGT AATGGTTCAA CAGAAGATAT TACGGCGCGT 
ATTCTTGATT TAGCTTCTCC AATTGGCCGT GGTCAACGTG GTCTGATTGT TGCTCCGCCA 
AAAGCGGGTA AAACAATGCT ACTTCAAAAC ATCGCTCAAA GTATTGCTCA CAACTACCCA 
GAATGTGAGT TGATGGTTCT ACTTATCGAT GAACGTCCAG AAGAAGTAAC TGAGATGCAA 
CGCCTTGTTA AAGGTGAAGT AATTGCGTCT ACGTTTGATG AGCCAGCGTC TCGTCACGTA 
CAAGTTGCTG AAATGGTTAT CGAGAAAGCG AAACGTCTTG TAGAGCATAA AAAAGACGTG 
GTTATCCTAT TGGATTCAAT TACTCGTCTT GCTCGTGCAT ACAACACCGT TATTCCATCA 
TCAGGTAAAG TTCTTACTGG TGGTATTGAT GCAAACGCAT TACACCGCCC TAAACGCTTT 
TTTGGTGCAG CACGTAACGT TGAAGAAGGT GGCAGTTTAA CTATCATTGC AACGGCACTT 
GTTGATACCG GCTCTAAAAT GGATGAAGTT ATCTACGAAG AGTTTAAAGG TACGGGTAAC 
ATGGAATTGC ATTTAAACCG TAAAATTGCG GAAAAACGTA TATTCCCAGC GATTGACTTT 
AATCGTTCTG GTACTCGTCG TGAAGAGTTG CTAACTAAGA CTGATGAATT ACAGAAAATG 
TGGATCCTAC GTAAGATTGT TCATCCAATG GGTGAAAGTG ATGCGATGGA ATTCCTAATT 
GATAAACTAT CAATGACAAA AACGAACAAT GAGTTCTTTG ACGCGATGCG TCGCCAGTAA 

 

Protein sequence

MNLTELKNRP VSDLVALGES LGLENLARLR KQDIIFSILK QHAKSGEDIF GDGVLEILQD 
GFGFLRSADC SYLAGPDDIY VSPSQIRRFN LRTGDTIGGK IRPPKDGERY FALLKVNAVN 
YDRPDNARNK ILFENLTPLH ANDRLRMERG NGSTEDITAR ILDLASPIGR GQRGLIVAPP 
KAGKTMLLQN IAQSIAHNYP ECELMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGID ANALHRPKRF 
FGAARNVEEG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN MELHLNRKIA EKRIFPAIDF 
NRSGTRREEL LTKTDELQKM WILRKIVHPM GESDAMEFLI DKLSMTKTNN EFFDAMRRQ