| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0100 |
|---|
| Symbol | |
|---|
| ID | 6986313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 134738 |
|---|
| End bp | 136618 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643378493 |
|---|
| Product | putative cyclic nucleotide binding protein |
|---|
| Protein accession | YP_002261651 |
|---|
| Protein GI | 209693723 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTTG AACTGTTAGA GATCCAACAT TTTTTATCTC AATACCCTCC ATTCAGTTTA
TTACCTGAAG AGGCGATAAA AGAAGCCGCC CAAAGCGTTG AAATTTCTTA TTACCGTGCA
GAGAGTATGG TAATTGGCTT TGGTGATGAG ATCAAAGACC TCTACATGGT TCGCAGTGGG
ATTATAGAAG TCTATCGTCG TAACGGGGAG CTCTATAACC GACTGGATCA AGGCAGTATT
TTTGGTCAAA TGGGCTTATT AATGAATAAT AAAGTTCGTT TCCCAGCCAA AGCACTTAAA
GATTCTCTTC TTTATTGTAT ACCTGAATCT GTATTTGATG ATTATTGTGA ACGTTATGAT
GAATTCTCAG ATTTCGTTGA AGTGGAAGAT GCCACTCGTC TAAAGCAAGC CGTTGAAAGT
AATCATGATG ACGCCAATGA TTTAACGACA TCAAAAGTAA AAACATTGCT GACTCGTGAA
GCAGTCATGA TCACCAAATA TGAAACCATT CAATCTGCCG CAAAAACCAT GGCAGAAGAG
AATGTCTCAG CGGTTTTAAT TACCGATCCA GAAATCAATA CCGATGAAGA AGATAACGAC
TTTGTTGGCA TTATTACTGA CCGTGATTTA TGCACCAAAG TCCTCGCCTG CGGACTAGAT
TTTGATACTC CGGTTTCAGA AGTCATGTCG ACAGAGCTGA TTTCACTCGA TCACAACGCT
TATGTATTTG AAGCGATGTT GATGATGTTG CGCTACAACG TTCATCATCT TCCTGTACTT
CGTAATAAGC AGCCTATTGG CGTACTTGAA GTCTCTGATA TCGTGCGTTA TGAATCTCAA
AATAGCCTGT TATTTGTGAG CAGTATCTTC CAACAACAAA CCATCGAAGA TCTCGTTATT
CTTTCTGCTC AACTTAAAGA TTGTTTTGTA CGAATGGTAA ACGAAGATGC CAACTCACAC
ATGGTGGGTA GCGCGATGTC TGAAATTGGT CGCAGCTTCA AACAACGTTT ATTAGAGCTC
GCTGAAGAAG AATTAGGTCA CCCACCTGTG CCTTATTGTT TCTTAGCATT AGGATCAATG
GCTCGCGATG AACAACTGAT TGTAACTGAC CAAGATAACG CAATTATTTT AGACAATGAC
TACAATGAAG CCGAACACGG TGACTATTTT AAAGCCTTAT CGGCTTTTGT TTGTGATGGT
TTAGCGGCAT GTGGTTATAC CTATTGTACT GGCGATATCA TGGCAACCAA TCCTGAATGG
CGTAAAACTC AATCGGAATG GGAAGAATGC TTTGCTGACT GGATTGATAA CCCAGATCCT
CAGGCATTAT TAAACAGCTC TATCTTCTTC GATTTAAATG GCGTTTATGG CCGTACTAAA
TGGGCTGAGC AGTTAAATGG CTTTATTGTT CGTCGTGCGA AAAAGAACAA TCGTTTCCTT
GCTTGTCTTG CTCGAAACGG CTTACGCCGA ACGCCACCAC TGGGGTTCTT TAAAGACTTC
GTGATGGAGA AAGATGGTCG CCATAATAAC TCGATCAACT TAAAACGTCG CGGAACCGCC
CCCCTTGCTG ATCTTATTCG TGTTCATGCT TTGGCTATTG GCTCTCAAGC CCAAAACTCC
TTTGAACGTT TAGATGACAT TATTGAAGCC GGTATTCTGC CAAAATCAAA AGGCGGAGAT
TTACATCATG CGATGGAATT GATTTCTTTG GTTCGTTTAC GTCACCAAGC GTTAGATGTC
GAAGCAAACA TTGAACCGGA TAATAATATT GAGCCTGAAA ACATGTCTGA TTTTGAACGC
CGAAATTTAA AGGATGCGTT CCAAGTACTC AGCAATGCAC AAAACTTCCT TAAATTTCGC
TATAGCGCCA GCAAATTCTA G
|
|---|
| Protein sequence | MEVELLEIQH FLSQYPPFSL LPEEAIKEAA QSVEISYYRA ESMVIGFGDE IKDLYMVRSG
IIEVYRRNGE LYNRLDQGSI FGQMGLLMNN KVRFPAKALK DSLLYCIPES VFDDYCERYD
EFSDFVEVED ATRLKQAVES NHDDANDLTT SKVKTLLTRE AVMITKYETI QSAAKTMAEE
NVSAVLITDP EINTDEEDND FVGIITDRDL CTKVLACGLD FDTPVSEVMS TELISLDHNA
YVFEAMLMML RYNVHHLPVL RNKQPIGVLE VSDIVRYESQ NSLLFVSSIF QQQTIEDLVI
LSAQLKDCFV RMVNEDANSH MVGSAMSEIG RSFKQRLLEL AEEELGHPPV PYCFLALGSM
ARDEQLIVTD QDNAIILDND YNEAEHGDYF KALSAFVCDG LAACGYTYCT GDIMATNPEW
RKTQSEWEEC FADWIDNPDP QALLNSSIFF DLNGVYGRTK WAEQLNGFIV RRAKKNNRFL
ACLARNGLRR TPPLGFFKDF VMEKDGRHNN SINLKRRGTA PLADLIRVHA LAIGSQAQNS
FERLDDIIEA GILPKSKGGD LHHAMELISL VRLRHQALDV EANIEPDNNI EPENMSDFER
RNLKDAFQVL SNAQNFLKFR YSASKF
|
|---|
| |