| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0098 |
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| Symbol | |
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| ID | 6986311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 132347 |
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| End bp | 133927 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643378491 |
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| Product | transporter, BCCT family |
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| Protein accession | YP_002261649 |
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| Protein GI | 209693721 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGAA ATAAGGATAA GTACAGTATA GATAACACGG ATTATACTGT TGGACAGGAT
AACGTTCAAA AATGGGGATT GGATATTCAT AATACCGTCT TCGGCATTAG TGCTGGTTTA
ATTGCACTCT TCTTAATTGC GGTTGCAGTG ACTGATCCAG AAACCGCTAA GACGGTTCTA
AATGGTTTAA AATCACAAAT TATCAATGCA TTTGATGGTT TGTTTATGTG GTCTGCGAAT
ATCTTTGTGG TTTTCTGCTT AGCATTAATT GTGTCTCCAT TCGGTAAGAT CCGCCTTGGT
GGTGATAAAG CGAAACCCGA TTATTCGATG ATCTCTTGGA TTGCGATGTT ATTTGCTGCG
GGCATGGGCA TCGGTCTTAT GTTCTGGGGG GTTGCTGAAC CTGTTGCTTA CTTTACCGGT
TGGTTTGGAA CGCCGTTAGG TGTTGAAGCT TATACTCCAG AAGCAAGGCA ACTCGCGCTT
GGTGCGACCA TGTTCCACTG GGGTATTCAC CCGTGGGCTA TTTATGGTGT CGTTGCTTTA
TCACTGGCCT TCTTTTCTTA CAATAAAGGC TTACCGCTTT CTATGCGTTC AATCTTCTAT
CCAATTTTAG GGGATCGTAC ATGGGGGTGG CCTGGTCACA TTGTTGATAT TCTTGCCGTT
CTTGCTACCT TATTTGGTCT TGCGACTTCT CTAGGTCTTG GTGCACAACA AGCAGCAAGT
GGCTTCCAGC ATGTGTTTGG TATTGAAGGT GGCTTAGGTT TACAAGTTGC GATTATTTTC
ATTGTTACGT TACTTGCCGT TGTGTCGGTA ATGCGCGGTA TTGATGGTGG CGTAAAAATT
ATCAGTAATA TCAATATGAT CATTGCGATA GTGTTTGTTG TTTTTGTTGC TTTAGTTACC
TTTGCGGTTT CTATGGGGGC GATCCCAACA ACGATCATGG GTTATATTGA AAATATTATT
CCATTGAGTA ATCCAAGTGG TCGTGATGAT GAAGCGTGGA TGCACGGTTG GACAGTGACT
TACTGGGCGT GGTGGATTTC ATGGTCTCCA TTTGTTGGTA TGTTTATCGC TCGAGTATCT
CGTGGTCGTA CGGTTCGTGA GTTCTTGATT GCGGTATTAG TGGTTCCAAC TGTCTTTACT
GTGCTGTGGA TGTCTACTTT TGGTGGCGTT GCGATTGATC AAGTGATGAA TAATGTGGGT
ACATTGGGGA CTGATGGATT AACCGACGTC TCTCTGGCGA TGTTCCAAAT GTTTGATGCT
CTGCCTATGG GTAATGTTTT ATCTATGATT GCTGTTGTTC TGGTGTTGGT CTTCTTTATT
ACCTCATCGG ATTCAGGCTC ATTGGTTATC GATAGTATTA CCGCTGGTGG TAAAGTTGAT
GCGCCAATTC CACAACGTGT TTTTTGGGCG TTCATGGAAG GGGCAATTGC CGTTGCTCTA
TTATGGGTAG GTGGAACACA AGCGGTTGAA GCGCTTCAAG CAGGTGCGAT TTCTACCGCA
CTGCCGTTTA CCATTATTCT ATTAGTGATG TGTGTCAGTT TGCTTATGGG CATGAGAACA
GAGAAACATA ATCGTTCTTA A
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| Protein sequence | MSRNKDKYSI DNTDYTVGQD NVQKWGLDIH NTVFGISAGL IALFLIAVAV TDPETAKTVL
NGLKSQIINA FDGLFMWSAN IFVVFCLALI VSPFGKIRLG GDKAKPDYSM ISWIAMLFAA
GMGIGLMFWG VAEPVAYFTG WFGTPLGVEA YTPEARQLAL GATMFHWGIH PWAIYGVVAL
SLAFFSYNKG LPLSMRSIFY PILGDRTWGW PGHIVDILAV LATLFGLATS LGLGAQQAAS
GFQHVFGIEG GLGLQVAIIF IVTLLAVVSV MRGIDGGVKI ISNINMIIAI VFVVFVALVT
FAVSMGAIPT TIMGYIENII PLSNPSGRDD EAWMHGWTVT YWAWWISWSP FVGMFIARVS
RGRTVREFLI AVLVVPTVFT VLWMSTFGGV AIDQVMNNVG TLGTDGLTDV SLAMFQMFDA
LPMGNVLSMI AVVLVLVFFI TSSDSGSLVI DSITAGGKVD APIPQRVFWA FMEGAIAVAL
LWVGGTQAVE ALQAGAISTA LPFTIILLVM CVSLLMGMRT EKHNRS
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