Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0083 |
Symbol | aroE |
ID | 6986300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 84984 |
End bp | 85805 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643378446 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002261635 |
Protein GI | 209693707 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.59928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAGT ATGCAGTCTT TGGTCATCCC ATTAAGCAAA GCAAATCTCC TTTTATTCAT ACATTATTCG CTCGTCAAAC AATACAACCT TTGGAATATG TTGCTATTGA GGCTCCAGTG GATGGCTTTC TTAATTCGGT AACTCATTTT TTTTCTAATG GGGGTAAAGG CTGTAATATT ACCGTACCCT TTAAAGAAGA AGCATTTCAA TTTGCCGATC AATTAACAGA TAGAGCAAAA TTGGCTGGTG CGGTTAATAC GCTAAAAAAG CTGGATGATG GAATTATTCT CGGTGATAAC ACGGACGGTG AAGGATTAGT TCAAGACTTA CTGCAATATC AGGTACCACT TCAAGATAAG CGTATCTTAT TAATTGGAGC AGGAGGGGCA GCACGAGGTG TACTTCTTCC CTTATTAAAA CAAAACCCCT CTTCTATTAC CGTAGTTAAT CGCACTTATG AAAAAGCAGA AGCACTAGCT GAAATATTTT CAGCGTATGG TGCTGTAGAG GCGGTTCGCA TGAGTGACGT GACACGATCG TTTGATGTGA TAATTAATTC AACGTCTGCC AGTTTATCTG GAGAGTTACC TAATATTAGT CCAGTGATTT TTTCTAAAGG CAGTATCAGC TATGACATGA TGTATGGCAA AGGTAAAACG GTCTTTAATC AATGGGCATT AGATAATGAT GTATACCAAG CTTATGATGG ATTAGGAATG TTAGTTGGGC AAGCTGCGGA AAGCTTTACT GTATGGAGAG GATTACGTCC TAGCAGCAAA CAAATACTAC GAGAACTTCG CAAAAATTTA GAAGGTATGT AA
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Protein sequence | MDKYAVFGHP IKQSKSPFIH TLFARQTIQP LEYVAIEAPV DGFLNSVTHF FSNGGKGCNI TVPFKEEAFQ FADQLTDRAK LAGAVNTLKK LDDGIILGDN TDGEGLVQDL LQYQVPLQDK RILLIGAGGA ARGVLLPLLK QNPSSITVVN RTYEKAEALA EIFSAYGAVE AVRMSDVTRS FDVIINSTSA SLSGELPNIS PVIFSKGSIS YDMMYGKGKT VFNQWALDND VYQAYDGLGM LVGQAAESFT VWRGLRPSSK QILRELRKNL EGM
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