| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0076 |
|---|
| Symbol | |
|---|
| ID | 6988400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 79281 |
|---|
| End bp | 80342 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643378439 |
|---|
| Product | putative cell wall degradation enzyme |
|---|
| Protein accession | YP_002261628 |
|---|
| Protein GI | 209693700 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAA AAATGCTGAT ATTAACCTCA CTATTCACCA CTATAACGCT ATCTCCACTG
TCTTTTTCTA ACGAAGATAA GTTGATGTTA AAAAAGGATT ACCCTGACAC GTATACCGTA
GAAAAAGGGG ATACGTTATG GGATATATCC GCTCTCTTTC TTGATAACCC TTGGTTTTGG
CCAAAGCTAT GGAAAATTAA CCCTGATATC AATAATCCTC ATTTAATTTA TCCCGGAGAT
AAGTTGAGCT TAAGTTGGCA TAACGGAAAC CCTGTTTTAA GTCTTAAGCC GTTGCAAAAA
TTATCACCCA AAACTCGGAT CATAGAAAAA GAAGCGGTTC CGACGTTAGC GCCGAGTTTA
GTTGTTCCCT ATTTAAAATC AGATCGTTTA ATTGATGATG TTAATTATCG AGCGGCTTAT
CGAGTGTTGG GTACGAGTGA CGGACGTAAG TTTCTTAGTT CAAATGAGCG AGTCTATGTT
GATGGTGAAC TTTCACATAA GGAATGGGGT ATTTATCGCG TAATTAATGA ATTTAAACGT
AGAGATAATA AAGAAAAAGC GTACGCACTG AAATCGATAG GTACTGCAGA ATTGGTAGAC
AGCACGGAAG AATTTAGTGG ATTGAGAGTC CTTAAACAAC AACAAGAAAT CACGATAAAT
GACATTGTTT TACCGTTAGA CGGTAAGAGT AACTTATCAC TAACCACTAC GTTTTATCCG
TTGCCCGCAC CAACAAATAG TAAGGCTTCA TTATTGGGTT CTATTGATGG CGGAGACTAT
TTGGCGGTTA ATCAAGTGGC GGTGATAGAT AAAGGGACAA ATGACGGGTT ACAACAAGGA
AGTATGTTCG CATTAAAAGA AAAAGGGTAC GCAGTAAAAG GAGATAAAGG TGAATATCAT
TATGATGACG AAAACAATAA AAAGAGTATT CAGTTACCAG AAACGGTGGT TGGAGAGCTG
ATAGTGATTC GTCCTTATGA ATCATTTAGT TTAGCGTTAA TAACTCGCAG TGAAACGCCT
ATTCATAAGC GAATGATTGT GACCTCACCA CAGACAAAAT AG
|
|---|
| Protein sequence | MFKKMLILTS LFTTITLSPL SFSNEDKLML KKDYPDTYTV EKGDTLWDIS ALFLDNPWFW
PKLWKINPDI NNPHLIYPGD KLSLSWHNGN PVLSLKPLQK LSPKTRIIEK EAVPTLAPSL
VVPYLKSDRL IDDVNYRAAY RVLGTSDGRK FLSSNERVYV DGELSHKEWG IYRVINEFKR
RDNKEKAYAL KSIGTAELVD STEEFSGLRV LKQQQEITIN DIVLPLDGKS NLSLTTTFYP
LPAPTNSKAS LLGSIDGGDY LAVNQVAVID KGTNDGLQQG SMFALKEKGY AVKGDKGEYH
YDDENNKKSI QLPETVVGEL IVIRPYESFS LALITRSETP IHKRMIVTSP QTK
|
|---|
| |