Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0073 |
Symbol | rsmB |
ID | 6989317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 76303 |
End bp | 77637 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643378436 |
Product | ribosomal RNA small subunit methyltransferase B |
Protein accession | YP_002261625 |
Protein GI | 209693697 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAATA TCGTATTTGC CATTTTATTT TGCCAATCAT ATTTAGGTGA TGACATGAAC GTTCGTGCTG CGGCAGCCAA AGTTATTTAT CAAGTTGTCG ATCAGGGTCA TTCTCTCTCT TCAGCGCTTC CAAAGGCTCA ATCTGAGATC AAGCCTCGTG ACCAAGCCTT ATTGCAAGAA ATTTGCTACG GCGTACTGCG CTTTCTTCCT CGTTTAGAGT CGGTTGCTCA ATCCTTAATG GATAAACCAT TAAAAGGAAA GCAACGTGTT TTCCATCATC TGATCCTAGT TGGTATTTAT CAACTTAGTT TCATGCGTAT TCCTGCACAC GCTGCGGTAG GCGAAACCGT TGAAGGCACT AAAAACCTAA AAGGTCCAAA ACTGCGTGGT TTGATCAACG GTGTACTTCG AAGCTACCAA CGTAGCCAAG AAGAATTAGA TGCAAAATCA ATCAGTCACG ATTCAGGTAA ATACGGTCAC CCTGGTTGGT TGCTAAAAAT GCTAAAAGAA GCGTACCCAA CACAATGGGA ATCGATTGTT GAAGCAAACA ACAGCAAAGC ACCTATGTGG TTACGAGTTA ATAGCCAACA CCACACTCGT GATGAATACA TTGCATTACT TGAAAAAGAA GAGATTGCAG TAACCCCTCA CAGCCAAGCA ACAGACGCTT TGTTATTAGA TAAAGCGCGT GATGTATTTA CATTGCCAGG CTTCGAAAAA GGGTGGGTAT CCGTACAAGA TGCCGCTGCA CAGCTATCTG TTGAGTATCT ACAACCACAA GATGGTGAGC TGATTTTAGA TTGCTGTGCC GCTCCAGGTG GTAAAACGGC GCACATTCTA GAGCGCACTA AAAACACCAA CGTTGTCGCT ATTGATTGTG ATGAAACTCG CTTAACCCGT GTTTACGAAA ATCTAGAACG TTTAAATCTT GAAGCTAAAG TGATTTGTGG CGATGCTCGT CACCCTGAAG AATGGTGGCA AGGTGAACAA TTTGATCGCA TTTTATTAGA TGCGCCTTGT TCTGCAACCG GAGTTATCCG CCGCCACCCA GATATTAAAT GGCTACGTCG TTCAGAAGAC ATCAAGGCAC TTGCAGAATT ACAAAGTGAA ATCTTTGATG CAATGTGGCT ACAACTAAAA TCAGGCGGCA CCATGGTGTA TGCAACTTGC TCAATCACAC CACAAGAAAA CGGTGATCAA GTAAAAGCCT TTTTAGAACG TACTGAAAAC GCGTCTCTGG TGGATAATAC AGACCCAGCA AAACCTGGAC GTCAAATTCT TCCTGGTGAA GAAAATATGG ATGGCTTCTA TTACGCCGTT CTACAAAAAG CATAA
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Protein sequence | MANIVFAILF CQSYLGDDMN VRAAAAKVIY QVVDQGHSLS SALPKAQSEI KPRDQALLQE ICYGVLRFLP RLESVAQSLM DKPLKGKQRV FHHLILVGIY QLSFMRIPAH AAVGETVEGT KNLKGPKLRG LINGVLRSYQ RSQEELDAKS ISHDSGKYGH PGWLLKMLKE AYPTQWESIV EANNSKAPMW LRVNSQHHTR DEYIALLEKE EIAVTPHSQA TDALLLDKAR DVFTLPGFEK GWVSVQDAAA QLSVEYLQPQ DGELILDCCA APGGKTAHIL ERTKNTNVVA IDCDETRLTR VYENLERLNL EAKVICGDAR HPEEWWQGEQ FDRILLDAPC SATGVIRRHP DIKWLRRSED IKALAELQSE IFDAMWLQLK SGGTMVYATC SITPQENGDQ VKAFLERTEN ASLVDNTDPA KPGRQILPGE ENMDGFYYAV LQKA
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