Gene VSAL_I0049 details

Gene Information

• Locus tag: VSAL_I0049
• Symbol: hlyIII
• ID: 6986281
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 52420
• End bp: 53067
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 643378418
• Product: hemolysin III
• Protein accession: YP_002261607
• Protein GI: 209693679
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.152142
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTACCA CTACTCCTTA TTCAAAAAAA GAAGAATTAG CCAATAGTTT AAGCCATGGT 
TTAGGGCTTG TTTTTGGTGT TGTTGCGTTA ATTTTATTAT TGGTAAAAGC AAATGCAGTG 
GATGCAGACT GGTTAACCAT CGCAAGTATG TCTGTTTATG GGGCCAGTAT CATTTTATTG 
TTTTTGGCTT CAACGCTTTA TCATTCTATT GCTACACCTA AAGCGAAACG TTTATTAAAA 
ACGCTCGATC ACTGTGCCAT CTTTTTACTT ATTGCTGGCA GTTATACGCC ATACTTATTA 
GTGAGTTTAC GTACACCACT CGCATATTGG TTAATGGCTG TGATCTGGGC TATCGCGTTG 
ATAGGTATTA TTGGAAAGAT TGTTTTTGTC TATCGTTTTA AAAAACTATC CCTTATTACC 
TACCTTATCA TGGGTTGGTT ATCGGTTATT GCGGTGTACC AATTAGTGAT TCATATCGAT 
ATTAATGGGG TGATTTTATT AGGCCTTGGA GGGGTGATTT ATTCTCTTGG GGTTATTTTT 
TATGTGTCAA AGAAGATCCC ATACAATCAT GCTATTTGGC ATCTGTTTGT TTTAGGCGGT 
TGTGTGACGC AATTCTTATC TATTTATTAT TATGTTCAAC CAGTATAA 

 

Protein sequence

MSTTTPYSKK EELANSLSHG LGLVFGVVAL ILLLVKANAV DADWLTIASM SVYGASIILL 
FLASTLYHSI ATPKAKRLLK TLDHCAIFLL IAGSYTPYLL VSLRTPLAYW LMAVIWAIAL 
IGIIGKIVFV YRFKKLSLIT YLIMGWLSVI AVYQLVIHID INGVILLGLG GVIYSLGVIF 
YVSKKIPYNH AIWHLFVLGG CVTQFLSIYY YVQPV