Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_p840_55 |
Symbol | |
ID | 6961466 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011311 |
Strand | + |
Start bp | 59510 |
End bp | 61699 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | |
Product | putative beta-N-acetylhexosaminidase precursor |
Protein accession | YP_002261545 |
Protein GI | 215778405 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000000313171 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCGGA TTACCCAATT TGCTTTAATG TATTTATTGT CATTGCCTTT ACTCGCTAGC TCTTTAACTC CATTGGCGGA TGATTATATA GAGAAAAATG GGCTAAGAAA ATCAGCTGCT CAATTGCTAG TAACAGGAAT TGTCGCCGAC TATAATAACT TCTCGTATAA TAAAAAAACG CAAGAATTAT TAAATCTGAA TGTGGGCGGG ATTATTATAA ATGCCTACAA TGTTCCTGTT CCTCACAATA CAAATAACCG TAATCATGCA ATACAAATAA TAAAAGATTT TACTAATTCA ATTCGTAGTG TTCATGTAGA TGGGAGTGAT CTTTTAATTG CTGTAGATTT TGAAAGTTAT AGGTATACAT CTCTTCGGTA TCCTTTAATT GCACCTCCAA GCGCACTTAC GTTATCAGCT AACAATTCTA CTAAGTCTGC ATTTAATGCC GGAGATGATG CCGGTAGACA ATTAGAAAAT GTAGGTGTGA ACGTTATACT CGGCCCAGTA TTGGATAAAG ACTCAAAGTT ACAGGGTACA AGAAATACAA ACTTAATGAA TAGAAGTTTT GGTAGTGATT CTAAGGTTAT TTCCGTATTT GCTTCCGAGT TTATTAGGGG AGTAAGTAAT AATAGAGTAG CGACATTTGC AAAACACTTT CCTGGGTATG GTTTTGTTGA TTCAAATCCA CATAATGACG ATAAGGTCGA TATTAACGCT CCAAGAAAAA CAATAATTGA GGATTTAAAG CCATTTAGTA ATACGAGTTC TCTACTTTCT GGAGTAATGA CTTCTCATTT ATATATAAAT AAGTCGAATA GGCCTTTGAC TGTAAGTAAA TCAAACTTAG ATTTATTGAT TAATAATGAA CACCTTAATT CTTTAAGAGA AAAAATAATT ATAACTGATG ACATCTCAGG AATGGCTTCC ATTCAGCAGT ACAGAAATGA TGATGGCATA AGTAACTCAA GACTTGTTTT AAATGCGTTT AAAGCTGGGC ATGATCTGAT CTTAATTAGT CATTTAGAGC ATCATAGTAA TAATAAATTT ACAGTTAGTG ATGTACGAGA ATCCATTGAT GAACTAGAAA AGTATGTACG AACAAAAAAT GGACTGTCGC AGCTTAAAGT ATCGTTAGAA AAAATACTGT TTTTAAAGAA AAAGGTTTCA TTGAAAAAGC AGGCAGTTAA TTTAGTAAAT GCTGATTATT TAAAAGTTAT TGAAAGCAGA AATTTGGAGA TCTACAAAAA TGGAACTATT AATGTAAGTA GCTCAGATGT AGATACCAAT ACAAATTTCA TGGACTTTGT GAACTCGGAA AACAAGGTCT ATATAGTAGG GAATTCTAGG TATTTTGATA GCATACAACA TAATATCCCT GCGAGTAAAA GTGTTGTTTA TACAGACATC AATGAACTAA AAAGAGGGAG CACTAAAGGG GCTGTTTTAA TAAATAAAAT TGGATTAAAA CTTTCTAAGA CTGTTGCAGA TGGAAACTAC CTTGTTTTTC TTGTTTCTTC TCTAGATTCG TACAATATCC TTGAATCATT GAGGTTACAT AATACTGACC CTAGTAGAGT TTTAGTTTCA GTTCATGGGT CCCCGCTACC AATAAAAACG GCTACTCTTC TTAACTATAA AATAGTGACG AACTTTGACT ATTCTCCTAG TTCTGCTTAC CCACTTGGCT TAATTCTTAA TGGTCATTTA AATCCAGGTA ATCTTCATAA ATCACCATTG GAATTAGGGA ATGGAGCGAT ATTTAAGTTA TCAGATCGAA TGGATATTGA ACATAGTGGT AGTGATAGTG ACTTGACAAA GAAAATAAGT AAAGAGGGAG AAAACAATCT AAATGTTAAA TTCTGGCTAT TAATTTTGCC TGTCAGTCTT ATTTTTGGTT CAAAAATCAT TTCAATGAGT ATTTTTTCTT GTCATGCAAA GAAGTCTCCA GATCTTGATA GTAGACGTAC GTTTTGGAGA GAGGCTTTGG TAAGTAAAGC TTATTTTAAA AGGAAAATTG CGATTTTGGC ATTACTGTTT TTAGGGTTTA TTGCAATACC TATTTTTATA TCTTCACCCG GGGACTTTAG CTATATAGTA ACATCTTCTG ATTATGTATT TGAAACTAGT ACGGTAAAAA ATATTGTAGA TATATTAATG TATGTTGATA AGTTTCTTGT AAAATTGTAA
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Protein sequence | MFRITQFALM YLLSLPLLAS SLTPLADDYI EKNGLRKSAA QLLVTGIVAD YNNFSYNKKT QELLNLNVGG IIINAYNVPV PHNTNNRNHA IQIIKDFTNS IRSVHVDGSD LLIAVDFESY RYTSLRYPLI APPSALTLSA NNSTKSAFNA GDDAGRQLEN VGVNVILGPV LDKDSKLQGT RNTNLMNRSF GSDSKVISVF ASEFIRGVSN NRVATFAKHF PGYGFVDSNP HNDDKVDINA PRKTIIEDLK PFSNTSSLLS GVMTSHLYIN KSNRPLTVSK SNLDLLINNE HLNSLREKII ITDDISGMAS IQQYRNDDGI SNSRLVLNAF KAGHDLILIS HLEHHSNNKF TVSDVRESID ELEKYVRTKN GLSQLKVSLE KILFLKKKVS LKKQAVNLVN ADYLKVIESR NLEIYKNGTI NVSSSDVDTN TNFMDFVNSE NKVYIVGNSR YFDSIQHNIP ASKSVVYTDI NELKRGSTKG AVLINKIGLK LSKTVADGNY LVFLVSSLDS YNILESLRLH NTDPSRVLVS VHGSPLPIKT ATLLNYKIVT NFDYSPSSAY PLGLILNGHL NPGNLHKSPL ELGNGAIFKL SDRMDIEHSG SDSDLTKKIS KEGENNLNVK FWLLILPVSL IFGSKIISMS IFSCHAKKSP DLDSRRTFWR EALVSKAYFK RKIAILALLF LGFIAIPIFI SSPGDFSYIV TSSDYVFETS TVKNIVDILM YVDKFLVKL
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