Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2574 |
Symbol | |
ID | 6878573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 2545290 |
End bp | 2546405 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642790431 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | YP_002220975 |
Protein GI | 198284654 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3524] Capsule polysaccharide export protein |
TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTCAAGG CCCTCTGGAC CCGGATCAGA AATCTGAACA AACTCTTTAT CTATGTGGTG GTTCTACCCA CCGCGGTAGC AATTCTCTAT TTCGGGATCA TCGCCTCGCC GGTTTATATC TCCGAGTCCC GCTTCATCGT ATACAGCCCC AGCCAACATA TGAGCAGTTC CGGTCTCAGC AGCCTGCTCA GCGGTCTGTC GGGCAGCAGC TCCATGACCG GCACCTACTC TGTCCACGAC TACATCGAAT CCTGGGACGC CATGATGGCG GTAAACCGCG CCTACAACCT GAAAGAGGTG TATGGCAATA GCGGGATCGA CATCTTCGGC CGTTTTGGCG GTCTCTTTTA CCCCTCCAGC AGCTACGTGA AACTGCTGCG CTATTACCAG TCCATGGTCA CCGACAACCT GGACAACACC AGCGGCATCA CCAAACTCAA GGTGCGCGCC TACAGCGCCG CGGATGCCCA AAAGATCAAC GCCTTCCTCC TGCAAAAAAG CGAAGCGCTG ATCAACCAGA TGAATGATCA AGCCAGGGAA AACGCGGTCA GCTATGCCCA GCAAGATGTA AACAAGGCCG AGGTGCGGGT AAATCAGGCC ACCGTCGCGC TCGCCGCATA CCGGAATCAG CATGCGGTAT TCAGCCCCGA TCCCCAGTCG GCGCTACAGC TCCAGCTCAT ATCCCAGCTC CAGACCCAGG TCATCTCTGA AAAAGCGCAA CTCGCCGCCA TTCTTCAACA CGCGCCACAA AACCCGCAGA TCCCCGTGCT GCGCAGTGGT ATCGCGGCGC TGGTGTCTGA AGTGGACAAG GAAAAAGCCA AGGTAGTCGG CGGAAAAAGC TCCCTGGCCA GTAAGGATCC GGCCTATGTG CGGCTGTCCC TCGCTCAGGC GTTGGCGACA AAGATCCTGG AGGCGGCGGT CACCTCGCTG GAACAGGCCA AGGTGGAGGC ACAGAAGCAG CAACTCTACC TGGAACCCAT CTCCAGGCCC AATCTGCCCG ATGCACCCCA AGAGCCGCAC CGCGTACGCG ATATCCTGGG CGTATTGGCC CTGGCGTTGG TGGTGTGGGG GGTGCTGAGC ATACTGGTCG CCGGCGTGCG AGAACACCAT GACTAA
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Protein sequence | MLKALWTRIR NLNKLFIYVV VLPTAVAILY FGIIASPVYI SESRFIVYSP SQHMSSSGLS SLLSGLSGSS SMTGTYSVHD YIESWDAMMA VNRAYNLKEV YGNSGIDIFG RFGGLFYPSS SYVKLLRYYQ SMVTDNLDNT SGITKLKVRA YSAADAQKIN AFLLQKSEAL INQMNDQARE NAVSYAQQDV NKAEVRVNQA TVALAAYRNQ HAVFSPDPQS ALQLQLISQL QTQVISEKAQ LAAILQHAPQ NPQIPVLRSG IAALVSEVDK EKAKVVGGKS SLASKDPAYV RLSLAQALAT KILEAAVTSL EQAKVEAQKQ QLYLEPISRP NLPDAPQEPH RVRDILGVLA LALVVWGVLS ILVAGVREHH D
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